MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-443C24
Chromosome	9 (Build37)
Map Location	98,106,025 - 98,106,525
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC384971, Trim42, Clstn2
Downstream gene	LOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC384971 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384971
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins pseudo : _no_value

name	Trim42 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78911 MGI:1926161
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Clstn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64085 MGI:1929897
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667298 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667298
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 580 ESTs, 9 Proteins pseudo : _no_value

name	Nmnat3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74080 MGI:1921330
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rbp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19659 MGI:97876
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rbp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19660 MGI:97877
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930579K19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75881 MGI:1923131
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 13 ESTs, 1 Protein

name	Copb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50797 MGI:1354962
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrps22 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64655 MGI:1928137
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG623166 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:623166 MGI:3645743
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins

name	EG623186 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:623186 MGI:3645937
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	2410012M07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71979 MGI:1919229
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 6 ESTs, 3 Proteins

name	LOC546155 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546155
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 350 ESTs, 2 Proteins pseudo : _no_value

name	LOC100040370 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040370
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	7420426K07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546157 MGI:3588253
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040380 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040380
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	LOC667347 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667347
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Foxl2os (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:768252 MGI:3614944
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Foxl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26927 MGI:1349428
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Faim (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23873 MGI:1344387
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm1123 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382097 MGI:2685969
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pik3cb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74769 MGI:1922019
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040442 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040442
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Trim42 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116174783 GeneID:78911 MGI:1926161
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif-containing 42 transcript_id : NM_030219.2

name	Clstn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254526 GeneID:64085 MGI:1929897
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calsyntenin 2 transcript_id : NM_022319.2

name	Nmnat3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130024 GeneID:74080 MGI:1921330
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nicotinamide nucleotide adenylyltransferase 3 transcript_id : NM_144533.2

name	Rbp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130209 GeneID:19659 MGI:97876
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retinol binding protein 1, cellular transcript_id : NM_011254.5

name	Rbp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142362018 GeneID:19660 MGI:97877
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retinol binding protein 2, cellular transcript_id : NM_009034.3

name	Copb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142344213 GeneID:50797 MGI:1354962
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coatomer protein complex, subunit beta 2 (beta prime) transcript_id : NM_015827.2

name	Mrps22 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801504 GeneID:64655 MGI:1928137
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein S22 transcript_id : NM_025485.2

name	EG623166 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260181 GeneID:623166 MGI:3645743
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins product : predicted gene, EG623166 transcript_id : XM_887600.3

name	EG623186 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260182 GeneID:623186 MGI:3645937
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : predicted gene, EG623186 transcript_id : XM_887617.2

name	2410012M07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386334 GeneID:71979 MGI:1919229
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 6 ESTs, 3 Proteins product : RIKEN cDNA 2410012M07 gene transcript_id : XM_486251.3

name	LOC100040370 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260165 GeneID:100040370
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : hypothetical protein LOC100040370 transcript_id : XM_001474560.1

name	7420426K07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803508 GeneID:546157 MGI:3588253
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 7420426K07 gene transcript_id : NM_001033983.2

name	LOC100040380 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260167 GeneID:100040380
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : hypothetical protein LOC100040380 transcript_id : XM_001474580.1

name	Foxl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22779927 GeneID:26927 MGI:1349428
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : forkhead box L2 transcript_id : NM_012020.1

name	Faim (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981397 GeneID:23873 MGI:1344387
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Fas apoptotic inhibitory molecule transcript_id : NM_011810.2

name	Gm1123 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124249110 GeneID:382097 MGI:2685969
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 1123, (NCBI) transcript_id : NM_001080776.1

name	Pik3cb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801344 GeneID:74769 MGI:1922019
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol 3-kinase, catalytic, beta polypeptide transcript_id : NM_029094.2

name	Trim42 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116174784 CCDS:CCDS23422.1 GeneID:78911 MGI:1926161
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : tripartite motif-containing 42 protein_id : NP_084495.2

name	Clstn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254527 GeneID:64085 MGI:1929897
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 note : calsyntenin-2 product : calsyntenin 2 protein_id : NP_071714.2

name	Nmnat3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21362329 CCDS:CCDS23423.1 GeneID:74080 MGI:1921330
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0009058 - biosynthesis [Evidence IEA]; GO:0009435 - NAD biosynthesis [Evidence IEA]; GO:0019363 - pyridine nucleotide biosynthesis [Evidence IEA] codon_start : 1 product : nicotinamide nucleotide adenylyltransferase 3 protein_id : NP_653116.1

name	Rbp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755300 CCDS:CCDS23424.1 GeneID:19659 MGI:97876
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA]; GO:0016918 - retinal binding [Evidence IEA]; GO:0005501 - retinoid binding [Evidence TAS]; GO:0019841 - retinol binding [Evidence IEA] GO_process : GO:0042572 - retinol metabolism [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : retinol binding protein 1, cellular protein_id : NP_035384.1

name	Rbp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982061 CCDS:CCDS23425.1 GeneID:19660 MGI:97877
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA]; GO:0016918 - retinal binding [Evidence IEA]; GO:0005501 - retinoid binding [Evidence TAS]; GO:0019841 - retinol binding [Evidence IEA] GO_process : GO:0001523 - retinoid metabolism [Evidence TAS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : retinol binding protein 2, cellular protein_id : NP_033060.2

name	Copb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789080 GeneID:50797 MGI:1354962
definition	GO_component : GO:0030126 - COPI vesicle coat [Evidence ISS]; GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005794 - Golgi apparatus [Evidence ISS] [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008565 - protein transporter activity [Evidence IEA] GO_process : GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : coatomer protein complex, subunit beta 2 (beta prime) protein_id : NP_056642.1

name	Mrps22 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384904 CCDS:CCDS23427.1 GeneID:64655 MGI:1928137
definition	GO_component : GO:0005763 - mitochondrial small ribosomal subunit [Evidence ISS]; GO:0005739 - mitochondrion [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003735 - structural constituent of ribosome [Evidence ISS] codon_start : 1 product : ribosomal protein, mitochondrial, S22 protein_id : NP_079761.1

name	EG623166 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82930646 GeneID:623166 MGI:3645743
definition	codon_start : 1 product : hypothetical protein protein_id : XP_892693.1

name	EG623186 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260183 GeneID:623186 MGI:3645937
definition	codon_start : 1 product : hypothetical protein protein_id : XP_892710.2

name	2410012M07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51765068 GeneID:71979 MGI:1919229
definition	codon_start : 1 product : hypothetical protein LOC71979 protein_id : XP_486251.1

name	LOC100040370 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260166 GeneID:100040370
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474610.1

name	7420426K07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702183 CCDS:CCDS23429.1 GeneID:546157 MGI:3588253
definition	codon_start : 1 product : hypothetical protein LOC546157 protein_id : NP_001029155.1

name	LOC100040380 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260168 GeneID:100040380
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474630.1

name	Foxl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22779928 CCDS:CCDS23430.1 GeneID:26927 MGI:1349428
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0043028 - caspase regulator activity [Evidence ISS]; GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence ISS]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence TAS] [Evidence IDA] GO_process : GO:0006309 - DNA fragmentation during apoptosis [Evidence ISS]; GO:0019101 - female somatic sex determination [Evidence IMP]; GO:0042703 - menstruation [Evidence ISS]; GO:0001541 - ovarian follicle development [Evidence ISS]; GO:0043065 - positive regulation of apoptosis [Evidence ISS]; GO:0043280 - positive regulation of caspase activity [Evidence ISS]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : forkhead L2; pituitary forkhead factor; putative transcription factor foxl2 product : forkhead box L2 protein_id : NP_036150.1

name	Faim (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981398 CCDS:CCDS23431.1 GeneID:23873 MGI:1344387
definition	GO_process : GO:0006916 - anti-apoptosis [Evidence IDA]; GO:0006915 - apoptosis [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : Fas apoptotic inhibitory molecule protein_id : NP_035940.2

name	Gm1123 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249111 GeneID:382097 MGI:2685969
definition	codon_start : 1 note : CAR-like soluble protein product : coxsackie adenovirus receptor-like protein_id : NP_001074245.1

name	Pik3cb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789235 CCDS:CCDS23432.1 GeneID:74769 MGI:1922019
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005942 - phosphoinositide 3-kinase complex [Evidence IEA] GO_function : GO:0004428 - inositol or phosphatidylinositol kinase activity [Evidence IEA]; GO:0043560 - insulin receptor substrate binding [Evidence IPI]; GO:0016301 - kinase activity [Evidence IEA]; GO:0016303 - phosphatidylinositol 3-kinase activity [Evidence IMP]; GO:0046934 - phosphatidylinositol-4,5-bisphosphate 3-kinase activity [Evidence IEA]; GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006874 - calcium ion homeostasis [Evidence IMP]; GO:0040016 - embryonic cleavage [Evidence IMP]; GO:0007156 - homophilic cell adhesion [Evidence IMP]; GO:0030168 - platelet activation [Evidence IMP]; GO:0001952 - regulation of cell-matrix adhesion [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation product : phosphatidylinositol 3-kinase, catalytic, beta polypeptide protein_id : NP_083370.1

name	LOC384971 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384971
definition	number : 2 pseudo : _no_value

name	LOC384971 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384971
definition	number : 1 pseudo : _no_value

name	LOC667347 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667347
definition	number : 1 pseudo : _no_value

name	LOC100040442 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040442
definition	number : 1 pseudo : _no_value

name	LOC100040442 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040442
definition	number : 2 pseudo : _no_value

name	LOC100040442 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040442
definition	number : 3 pseudo : _no_value

name	LOC667298 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260163 GeneID:667298
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 580 ESTs, 9 Proteins product : similar to ribosomal protein S7 pseudo : _no_value transcript_id : XR_031771.1

name	4930579K19Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149260180 GeneID:75881 MGI:1923131
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 13 ESTs, 1 Protein product : RIKEN cDNA 4930579K19 gene transcript_id : XR_035250.1

name	LOC546155 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260164 GeneID:546155
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 350 ESTs, 2 Proteins product : similar to F-actin capping protein subunit alpha-1 (CapZ 36/32) (Beta-actinin subunit I) pseudo : _no_value transcript_id : XR_031804.1

name	Foxl2os (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:141803134 GeneID:768252 MGI:3614944
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : forkhead box L2 opposite strand transcript transcript_id : NR_003248.2

clone name	MSMg01-381C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488O20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-147M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-196H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443C24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-319N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-300M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059P11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-463I04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-402N19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-536E24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-237L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176O06
singlet/doublet	doublet
plural/unique	plural

clone name	B6Ng01-289O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304D22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044B17
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-443C24.T7 (MSMg01no443_c24.b1)	MSMg01-443C24.TJ (MSMg01no443_c24.g1)
ACC	AG532654	AG532655
length	757	1,246
length of high quality (start - end)	503 (49 - 551)	---
definition	CHROMAT_FILE: MSMg01no443_c24.b1 PHD_FILE: MSMg01no443_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:42 2005	CHROMAT_FILE: MSMg01no443_c24.g1 PHD_FILE: MSMg01no443_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:43 2005
singlet/doublet	singlet	---
BLAST hit	plural	no hit data
sequence	NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAATCCGCG GAATTCTCTGTTTAGTTTCGTTCCCCATTTTTAATAGGGTTATTTGGTTC TCTGGAGAAGTAGGAAATTTTTATAACAACCTTAAATGCACTACTTTTTT TTTAAAGACTCATGGATATGCTTTATTACAGACATTTTCTCAAATGGTTA CATGTCTACCGTGGTATCTTATCTGTAATAGATGCTCAATAAATATTTGC TGAATTAAATAGAAAGTTGACTTTTTGTAAGCCACATCATCTTTTCAATA CCTCGAATTTGGTTTCCATTGAAAGTTTTGAAAGAATTTATTATTTTCTT ATTGGCATAAAATGGAGGTAAAAGGCATAAGATGTAATCCTGACATTAAA TTAAATTAAGTAAGATACTGTCTTCATTATATCTTTTTTTCTTTTTCTTT TTCCAATTTTTTATTAGGCATTTTCTTCATTTACATTTCAAATGCTATAC TAAAAGTCCCCTATACCCTCCTCCCACCACCCCACCCCACCCCCATCCCC TGGTCCTCTACCCACCCACTCCCACTTCTTTGGTACTGGCATTCCCCCGT TACTGGCGCCAAAAAAAGTTGCCAGATTAAGGGTCCTTTTTTTCCAATGA AGGCCCACTAGGCCCCCTTCTTGTTTAATATGTATCCAGAAACACCATTC CCTGGGGTTATAGTTTAACTCATCTATGTTGCTCCCCCTTATAGCTTGCC TAACCCC	ATAAAATCGGCGATCCATGATAACTGCGCATTGACGATAGTACGCTCTTC CCATCACCGATTACTGGAAATATTGGCCCCACACTACAGGGAGAGGAACA GGCGGGATATGAATAGGCGGGAATGCGCCATAGGGGATAACTACGCGTCG CCGCGCTTACGTACACCCGCCGATCCTCCTTTGATTACCCCGCTTAACAC ATTCATATTTTGATATATTTATTGTACCGACTGCGACACTAACCTATATA GTGATTGCACGGGGCGGCGTCAGCTCGAGAACCGCAGGAAANGGTCCCAA TACTACTGTATAAGCAAATAAGTATCGGGGGCACAGGGCGTAAACGGGCA CTATAGGAAATAGCCGAACAAAGATGCCGGCGGTAACACGCATAAAATAT ATTTACAGCGACGCGGGCACTGGCTGGTGTATATATGACATTAACCCGTC TCCCGCGAGCGAGGCGGGGACGAAGAAGAGTCGATATATAGAGCCGCGCG TGTAAGCGGCGGGGACACAACAATGCTGTGTATGCTATGACGAGGACCGT GTAAACAGGACACCCAGCGGCGGGTGGAAAATAGAACAATAGAGAAGGTC GGAGGGGCGGAGACGCGAAGAGAGAGAATAGATTATACGCCCCGTTATAT ATACGCGCCCGGAACACGCCCCGCGCGCGTATTCAGCCGAAATATCGAAA TTAGATATGGTAACGCGCAGAGATCGCGGTCCGGTATATACAAACCGAAG TTCGCGCGATAATATATATTATTGTACGCTCGCGCCTCGTAAGTGAGTCC TGCTGGATCAGTATAAGGAGCCGAATAGAGCGTACCACACGCCACAGCAA GTAGTTGGGCGCGCGCGGCAACAAGACGTATAGGCGGTACACCCGCGAGC CGGTATTATAGTGATGNTTACCATATCCGGTCGGTTAGATGAGAGGGAAA CGTGGANACACCATAGAGCTATAGTTGTGCGCTCACTACAACGCGCGCGG CGCGGGATAGGAAGAGTGACGGGTTAAAAGGAGATAGCGTGCGGACCGCG CCCGCATATAACATCGATATTAATACGCGGACGACGGTCGGCGGGCAACG CAAAATACGCGCACACACTGTGAACGAAGTGGAAGAGGTGGTGTGACACT GTATAACTAATAATGCAATATATATTATCATGTGTCAGCGATACGAGCGC NCAGATATATATGTGTGTCGAGTCGGCGCNGAGTCNTNATATATAN
quality values	Open. Hide. 0 3 6 8 8 8 8 14 14 19 19 24 19 19 16 20 20 39 25 19 10 10 10 21 21 41 31 31 33 33 33 33 27 25 11 9 6 7 7 9 9 7 8 8 8 8 15 15 23 25 27 31 31 31 33 33 59 59 59 47 27 27 8 6 6 6 8 8 11 11 12 12 15 19 23 24 32 32 37 48 48 48 57 53 53 53 53 57 57 53 53 53 53 53 53 57 57 57 57 68 59 59 59 57 57 57 57 68 68 68 68 68 68 68 50 50 50 50 50 51 57 57 57 32 29 19 19 19 35 32 68 57 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 68 68 68 57 57 50 50 50 50 50 57 57 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 57 57 52 57 52 57 57 68 57 59 54 54 54 59 57 68 68 57 57 52 52 43 57 57 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 57 57 57 57 57 59 57 57 57 57 44 42 31 31 21 27 32 32 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 53 57 57 59 59 59 57 57 57 57 57 57 48 48 48 57 59 59 53 50 50 50 47 41 30 25 11 10 10 10 13 23 12 12 11 12 18 27 32 41 41 48 48 59 59 59 59 59 59 59 59 59 57 57 57 59 57 43 43 43 43 43 48 59 59 47 59 41 30 24 9 9 9 9 17 24 37 43 39 41 43 37 59 39 43 43 47 43 48 48 59 57 57 57 57 48 48 48 53 57 57 59 59 59 59 68 68 68 59 59 57 57 57 57 54 57 44 44 28 37 37 32 41 30 28 28 41 36 48 57 57 59 59 68 59 59 35 35 35 42 42 47 57 57 54 54 54 59 59 68 68 68 68 68 68 44 44 25 25 25 36 44 43 43 43 46 37 26 26 21 10 10 10 10 17 19 59 59 59 59 59 46 46 39 40 37 30 30 37 37 39 39 35 32 32 28 28 20 24 24 30 37 37 43 37 31 31 35 37 37 39 40 37 37 37 37 28 30 28 20 20 32 37 37 37 39 39 39 36 36 37 37 40 36 37 39 39 39 28 28 27 27 15 12 12 19 16 22 28 32 39 43 34 21 11 8 8 8 11 15 33 26 21 10 10 9 8 13 9 11 19 17 28 28 34 34 31 28 21 18 9 12 11 16 10 7 6 7 7 8 10 10 10 10 16 19 24 32 34 34 16 12 10 9 9 9 8 8 8 8 8 8 8 10 10 10 10 10 11 11 12 10 10 10 10 10 10 12 16 11 11 10 10 10 11 10 9 14 9 11 15 18 33 24 19 9 8 8 8 8 8 10 10 9 9 11 8 8 8 8 9 9 10 11 11 11 9 9 8 8 8 11 9 9 6 6 7 6 6 6 8 8 8 10 10 8 8 8 10 8 8 8 10 8 8 11 9 9 9 11 10 8 8 8 9 10 9 9 9 9 10 12 12 10 10 9 9 8 8 8 8 9 9 8 9 9 8 8 8 9 9 10 8 8 8 10 6 6 8 9 8 9 9 9 6 8 8 9 10 11 13 12 13 13 13 13 14 14 18 20 20	Open. Hide. 8 10 10 12 8 8 8 8 8 8 8 10 9 10 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 6 8 6 6 6 6 8 8 6 6 6 6 8 10 8 9 8 8 8 8 8 8 10 7 6 6 6 8 8 11 8 8 8 8 8 8 11 8 8 6 6 10 8 8 8 8 10 10 10 9 8 8 8 8 8 8 10 10 12 9 12 10 9 8 12 10 10 10 11 11 12 14 14 10 10 10 8 8 6 6 6 9 10 12 10 11 11 11 10 8 8 8 8 8 8 9 10 10 10 10 10 15 12 10 10 10 10 7 8 9 9 9 9 11 6 6 6 6 6 6 8 8 8 8 8 8 8 8 8 9 10 10 10 9 11 10 6 6 6 6 6 6 15 13 13 12 12 11 10 10 9 8 8 8 8 8 12 9 9 7 6 8 8 8 8 8 8 8 8 8 8 8 8 8 7 6 6 6 8 8 8 8 6 6 6 6 7 6 6 6 8 7 6 6 8 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 10 8 6 6 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 10 8 8 8 10 9 9 11 12 12 12 10 10 9 9 10 10 14 8 10 10 10 10 8 8 8 8 8 8 3 0 3 7 7 8 8 8 10 8 8 6 6 9 9 8 8 8 8 8 8 10 6 8 6 6 6 6 7 8 8 10 8 6 6 6 6 7 10 17 10 13 10 12 10 8 8 6 6 8 6 11 10 10 10 10 10 10 8 8 8 6 8 6 7 8 6 6 6 6 6 8 8 8 8 8 8 8 11 11 8 8 8 8 8 8 6 6 6 10 10 8 8 8 6 6 6 8 8 8 8 7 9 9 11 10 10 11 11 10 15 15 13 8 10 9 10 8 8 8 8 10 8 8 7 10 6 7 8 6 9 8 6 6 6 7 6 6 9 8 6 6 6 6 6 6 8 8 8 8 8 10 9 10 10 11 12 9 10 8 8 8 8 8 8 9 9 8 8 10 6 6 8 8 10 10 8 7 9 9 9 9 10 8 8 8 8 8 8 6 6 8 6 8 8 8 9 7 10 8 8 8 6 6 6 8 13 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 9 9 9 8 8 6 6 6 11 15 8 8 8 8 8 8 8 8 6 6 6 6 6 8 6 8 8 8 8 8 8 8 8 8 11 8 8 8 8 8 8 6 8 6 6 8 8 10 8 10 9 9 8 8 8 8 8 8 6 6 6 8 8 10 11 8 8 6 6 6 6 11 10 10 10 10 8 8 8 8 13 12 10 8 10 8 8 10 10 8 8 8 8 8 8 8 9 10 16 11 8 8 10 8 8 7 7 7 12 10 10 11 11 14 10 10 10 8 8 8 6 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 13 13 12 13 8 8 8 10 8 8 8 10 10 9 9 10 10 8 8 8 8 8 8 8 8 8 11 8 6 6 8 6 8 8 8 9 10 10 9 9 10 11 12 8 8 8 8 8 8 8 8 10 8 8 8 10 8 9 8 8 8 8 6 6 6 10 10 9 8 9 10 10 7 7 8 6 8 8 8 8 8 8 8 10 8 8 8 11 12 15 10 8 10 10 11 12 19 8 8 8 8 8 8 9 10 9 9 10 9 8 8 9 10 11 10 8 8 6 6 6 6 8 8 8 6 6 8 6 6 8 8 9 8 6 6 8 8 8 8 10 8 8 6 6 6 6 8 8 8 8 8 8 8 8 10 10 10 10 16 15 10 8 8 7 7 7 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 8 10 13 17 10 10 9 8 15 8 8 8 7 7 7 8 11 9 9 10 15 10 10 7 6 8 6 6 6 6 6 8 8 10 10 6 6 8 8 6 7 8 7 8 8 8 8 8 8 8 8 8 6 8 8 8 8 8 6 6 6 6 6 8 3 0 3 8 6 6 6 6 13 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 8 6 6 8 8 8 8 11 8 8 8 8 8 8 6 6 3 0 3 8 10 10 10 9 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 10 10 12 12 11 11 9 9 9 9 9 15 10 10 12 10 12 10 10 10 10 10 8 8 8 10 10 6 6 8 8 9 10 10 10 10 8 8 6 8 8 8 8 8 8 8 9 6 6 6 6 6 6 8 8 8 8 8 8 7 7 6 6 8 8 8 8 6 6 6 6 6 13 9 8 8 8 8 10 8 9 9 11 6 6 6 6 8 6 6 8 8 10 10 10 8 13 10 10 10 10 8 8 8 11 8 8 8 6 6 6 6 6 12 11 10 10 10 6 6 6 6 8 10 10 8 8 8 7 7 9 9 10 11 10 8 8 8 8 10 8 8 8 10 8 9 9 10 11 8 8 8 10 10 7 6 6 6 6 6 6 10 10 10 10 8 8 8 8 8 8 11 10 8 8 8 6 6 6 6 6 6 6 8 8 6 6 6 8 8 8 8 8 8 10 10 10 8 8 8 6 6 6 6 6 8 9 8 8 10 10 8 8 8 9 8 8 8 6 7 3 0 3 6 8 8 9 8 8 8 10 10 10 10 8 8 8 8 8 8 9 9 6 6 6 6 8 8 6 3 0 3 8 6 6 3 0 3 0 3 8 8 8 8 8 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no443_c24.b1 MSMg01no443_c24.b1 CHROMAT_FILE:
MSMg01no443_c24.b1 PHD_FILE: MSMg01no443_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:42 2005
         (503 letters)



>mm_chr9_98105823_98106725
          Length = 903

 Score =  888 bits (459), Expect = 0.0
 Identities = 492/503 (97%), Gaps = 4/503 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctctgtttagtttc-gttccccatttttaatagggttatttggttctctggagaa 61
           ||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctctgtttagct-ctgttccccatttttaatagggttatttggttctctggagaa 261

                                                                       
Query: 62  gtaggaaatttttataacaaccttaaatgcactactttttttttaaagactcatggatat 121
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtaggaaatttttataagaaccttaaatgcactactttttttttaaagactcatggatat 321

                                                                       
Query: 122 gctttattacagacattttctcaaatggttacatgtctaccgtggtatcttatctgtaat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gctttattacagacattttctcaaatggttacatgtctaccgtggtatcttatctgtaat 381

                                                                       
Query: 182 agatgctcaataaatatttgctgaattaaatagaaagttgactttttgtaagccacatca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agatgctcaataaatatttgctgaattaaatagaaagttgactttttgtaagccacatca 441

                                                                       
Query: 242 tcttttcaatacctcgaatttggtttccattgaaagttttgaaagaatttattattttct 301
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 442 tcttttcaatacctcgaatttggtttccattgaaagctttgaaagaatttattattttct 501

                                                                       
Query: 302 tattggcataaaatggaggtaaaaggcataagatgtaatcctgacattaaattaaattaa 361
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tattggcataaaatggagggaaaaggcataagatgtaatcctgacattaaattaaattaa 561

                                                                       
Query: 362 gtaagatactgtcttcattatatcttttttt-ctttttctttttccaattttttattagg 420
           |||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||
Sbjct: 562 gtaagatactgtcttcattataccttttttttctttttctttttccaattttt-attagg 620

                                                                       
Query: 421 cattttcttcatttacatttcaaatgctatactaaaagtcccctataccctcctcccacc 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattttcttcatttacatttcaaatgctatactaaaagtcccctataccctcctcccacc 680

                                  
Query: 481 accccaccccacccccatcccct 503
           ||||||||||||||||| |||||
Sbjct: 681 accccaccccacccccaccccct 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information