Query= MSMg01no443_k21.b1 MSMg01no443_k21.b1 CHROMAT_FILE:
MSMg01no443_k21.b1 PHD_FILE: MSMg01no443_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:21 2005
(401 letters)
>mm_chr9_62057057_62057858
Length = 802
Score = 642 bits (332), Expect = 0.0
Identities = 383/404 (94%), Gaps = 11/404 (2%)
Strand = Plus / Minus
Query: 1 ggtggctcacaaccatctgtaatgggatctgacgccctcttctgatgcatctgaagacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggtggctcacaaccatctgtaatgggatctgacgccctcttctgatgcatctgaagacag 507
Query: 61 ctacagtgtacttagatataataataaataaatc--tttaaaaaaatttttttttaatta 118
|||||||||||||||||||||||||||||||||| |||||||||| ||| || |
Sbjct: 506 ctacagtgtacttagatataataataaataaatctttttaaaaaaa-----tttaaaaaa 452
Query: 119 aaaaaaaaagtaagactaaaagggaaaataaccaccat-ggggaaaaaaagctggcaaga 177
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 451 aaaaaaaaagtaagactaaaagggaaaataaccaccatgggggaaaaaaagctggcaaga 392
Query: 178 agccaaaagaaaatccacagaacacctgtgctgtagaaataggaggatcagaagtttaaa 237
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 391 agccaaaagaaaatccacagaacacctgtgctgtagaaacaggaggatcagaagttaaaa 332
Query: 238 accaagcggggcgtggtggcacacacctttaatcccagcacttgggaggcagaggcaggt 297
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 331 accaagtggggcgtggtggcgcacacctttaatcccagcacttgggaggcagaggcaggt 272
Query: 298 ggatttctgagttcgaggccagcctggtctacaaagtgagttccaggacaggcagggcta 357
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 271 ggatttctgagttcgaggccagcctggtctacagagtgagttccaggacaggcagggcta 212
Query: 358 tacagagaaacactgtctcgaaaaac--aacaacaaaagaagaa 399
||||||||||| |||||| ||||||| ||||| ||||||||||
Sbjct: 211 tacagagaaaccctgtcttgaaaaaccaaacaa-aaaagaagaa 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 802
Length adjustment: 9
Effective length of query: 392
Effective length of database: 793
Effective search space: 310856
Effective search space used: 310856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no443_k21.g1 MSMg01no443_k21.g1 CHROMAT_FILE:
MSMg01no443_k21.g1 PHD_FILE: MSMg01no443_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:21 2005
(530 letters)
>mm_chr9_61897786_61898715
Length = 930
Score = 946 bits (489), Expect = 0.0
Identities = 519/529 (98%)
Strand = Plus / Plus
Query: 1 aagtcatccttagctagatagtgagttagttggaagctaacctgagctacatgaacaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtcatccttagctagatagtgagttagttggaagctaacctgagctacatgaacaata 260
Query: 61 aaaggaggagggggcgagggagcaggagaggatcaggctagcccagactggtttgtgagt 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggaggagggggcgagggagcaggaaaggatcaggctagcccagactggtttgtgagt 320
Query: 121 tccctgacaatacatccttactccagcttcttcctgcaggttggatgtgttcactgggct 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tccctgacaatacatccttactccggcttcttcctgcaggttggatgtgttcactgggct 380
Query: 181 tgcagagggccctgtattcccagaaagccatgtactccggggttcactctaacccatgac 240
||||| |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 381 tgcagggggcccagtattcccagaaagcgatgtactccggggttctctctaacccatgac 440
Query: 241 catgactgaatattcatcagcaaactttgtgaaccctggggaaacagacaggtttgatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgactgaatattcatcagcaaactttgtgaaccctggggaaacagacaggtttgatgg 500
Query: 301 gaaaggagaagcagcagctttgagacagtgttagtctgatggaggcttagcccctcctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaggagaagcagcagctttgagacagtgttagtctgatggaggcttagcccctcctct 560
Query: 361 gggtgatgccctagtctggcagaaagacaggactccttgaaaagaggaaaattgctcata 420
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggtgatgtcctagtctggtagaaagacaggactccttgaaaagaggaaaattgctcata 620
Query: 421 aagccttaggaaccaagagaacaggagcagacaggtaacctgcccaggatggttatgcgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 aagccttaggaaccaagagaacaggagcagacaggtaacctgcccaggatggttatgggt 680
Query: 481 gtgagctcagaggtgatccacgactgttaaccaaaagggaggggagact 529
|||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 gtgagctcagaggtgatccaggactgttaaccaaaagggaggggagact 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
