BAC Information

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BAC

Clone NameMSMg01-443O11
Chromosome9 (Build37)
Map Location 85,510,230 - 85,510,369
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666672, BC023892
Downstream geneIbtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg, 2610018I03Rik, Pgm3, Rwdd2, Mod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443O11.T7 (MSMg01no443_o11.b1)MSMg01-443O11.TJ (MSMg01no443_o11.g1)
ACCAG533198AG533199
length756728
length of high quality
(start - end)
149 (164 - 312)238 (87 - 324)
definitionCHROMAT_FILE: MSMg01no443_o11.b1 PHD_FILE: MSMg01no443_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:39 2005CHROMAT_FILE: MSMg01no443_o11.g1 PHD_FILE: MSMg01no443_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTAAAATTGTGTGCGCTAAACGAANCACTAAATACCGACCCGCGGC
GGNAANCACAAATTTTCCAAAACCAGAGCACAGAGAGGCAACGACACCAC
CACGGCCCAAAGGAAAACATAACACCCAACTCAGCTGAAGAAGGAAAAGN
CGAACTAACGACGACTTGAGGAGAGTGAGTAAGAGGCAGGATTTACAGAC
GTGACTGTACCCTGTGGGAGAGGAACAGGCACACAGCAGACGCTGCCAGC
TTTTTTCCTGCCCGCACTGGGTTCTGTGGCTGCTGGGTTCTCCGTTCCAC
ATCCACAAGCGAGNTCTTTTATATTTTGGAAGCCNCACACCGCCCACCAC
CACGACCAACGTTTATCTACCCCCCGCCCTTCTCTGGTTCAGTTGCTGAC
TCAAAGTCTCATCTGACATCTGTGAGAAATGCGCCAATCATATTCGCCCT
GTCCCTAATACCCACTTTTGCTTTAACTTGTTTTGCCCCAAGCCCCGGTT
CCCTGCCTGGTTCTTCTCCCCACCTTCATCCACCCCCACCAGTTTCCCCC
ATTATTACCTACCCCCCACTGTCTTCGCCTCCCCTTGTATCCCCGCCCCC
ATCTTCACAATACTGCCCTATTTCCACCAACCCCGCAGCAAAAAACCGCC
ATGTTCCTTTTTCCTTTTTCTCTTCACCCCCNTTTATCCCCCCCCTCCCG
CCTTTTCTGCATCGCCCCATCTCCTCCCCCATACCCTCTCCTTTCTTTCC
TTCCCC
TCTTCGAAGACAGTGGTTAGGCCTGGNGGGCGCCCGGTTTCAAACACGAG
GNGACACTATAGAAGGTTTCGAAAAATTCCCATCANAAGACTAACAATTT
TCTTCAATAAAAAATTTAAGAATCATGCCTCACTTAAAAAAACAAAACAA
AACAAAACTTGAATGCTGAATGGTCAAAGCAATTTCAGCGAAAAGGAGAA
AGCTGGAGTTCCCATGATGACTCACATTGTTTAAATTCTCTTCAAAATAT
TTTAAAGCTAAATTTCTTTCCCATAGTTGTTATAGAAAACCATACCCATA
AACAGAAAACAGGAATTCAAGCATTTTCTTATCTGGAAAGCACTTAGGAG
AAACCTAGAATCATAGCCTATATTGGCCTTTGGTTGGCAGGGAGTTGCCT
CAACTTCTCTGTCTTTTTTCACAAAAATTTAAATACCCCATGGCAGAAAC
TTTGAAAAAATAGAGAAGAGACCAAAACAGTGTGCCTACCCTTGATCTAG
CAGCCCCTTCCCTAACTCCATTTTCGGGCATCCCTGCAGAGGTTTAGTCT
ATTGTTATATATATCGCAATGCTAAATTTTATACCCAAAGTTGAGCCTAA
GAGTGACTTCTCCAGTTTACACACCTTTGTTGTGCAAACCTTGTTCCTGA
TTTTAATTTGTTAAACCAAATTGGTGAAAGCCCCCTGCTCGCCTTTCCCA
AGGTCTGTGCCTTTTGCACCTCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_o11.b1 MSMg01no443_o11.b1 CHROMAT_FILE:
MSMg01no443_o11.b1 PHD_FILE: MSMg01no443_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:39 2005
         (149 letters)



>mm_chr9_85510030_85510572
          Length = 543

 Score =  228 bits (118), Expect = 1e-64
 Identities = 137/148 (92%), Gaps = 10/148 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgaggagagtgagtaagaggcaggatttacagacgtgactgtaccctgtgggagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgaggagagtgagtaagaggcaggatttacagacgtgactgtaccctgtgggagagg 260

                                                                       
Query: 61  aacaggcacacagcagacgctgccagcttt--tttcctgcccgcactgggttctgtggct 118
                 |||||||||||||||||||||| |  ||  ||||||||||||||||||||||||
Sbjct: 261 ------cacacagcagacgctgccagctctgctt--ctgcccgcactgggttctgtggct 312

                                       
Query: 119 gctgggttctccgttccacatccacaag 146
           ||||||||||||||||||||||||||||
Sbjct: 313 gctgggttctccgttccacatccacaag 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 543
Length adjustment: 8
Effective length of query: 141
Effective length of database: 535
Effective search space:    75435
Effective search space used:    75435
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)