BAC Information

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BAC

Clone NameMSMg01-443P24
Chromosome9 (Build37)
Map Location 99,876,027 - 99,876,359
singlet/doubletsinglet
Overlap genenone
Upstream geneFaim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456
Downstream gene4930519F24Rik, LOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443P24.T7 (MSMg01no443_p24.b1)MSMg01-443P24.TJ (MSMg01no443_p24.g1)
ACCAG533271AG533272
length820760
length of high quality
(start - end)
---333 (86 - 418)
definitionCHROMAT_FILE: MSMg01no443_p24.b1 PHD_FILE: MSMg01no443_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:46 2005CHROMAT_FILE: MSMg01no443_p24.g1 PHD_FILE: MSMg01no443_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCNTGCACTTNTTCTTCTGTCGNNNNNNGANNNGNATTTTTCCCAAGAC
CGCGGGANGCNNCGGTATGTCAAAAAACCATTTTTAAACGGGGNTATTCG
ATTTTCTACAGCCCACCTTCTTGAGCCCTTTATATATATTGGATATTAGC
CCCCTATCTGACTTAGGATAGGTTAAGATCCTTTCCCAATTTGTTGTCGG
CCTTCTTGTCTTATTGATTGTGTCTTTTGCCTTACAGAAGCTTCGCGACT
TTATGATGTCCCATTTTTCATTTCTCGATCTTACCTCACAAGCCCCGGCG
TTCTGTTCTTGAATTTTTCCCTGATGTTTCTATCTTCCAGTTTCTTTTCC
ACTTTCTCTTCTTTTTATTTTCTCGTCTTCTGGTTTTACGTTGGAGTTTC
CTCGACCTTTTCTCCCATCTCCGCCTCTACCCTTGGACACTCCTATTGAG
ATTATCTTAGATCGCTTTTTTTCCCCTTTTTCTTTTCTTTTTTCTACTCC
CTCTTTCCCTCGCTCATTACGCCTTTTTTCTTATCCCTTTATTTTGTCGC
TTTGTCTTCATTTTTTAATCTACTCTCTGTAATTTCCGCCTTATTTGCCC
TACCCTTTCTTGTTCTTTTCCCTTACTCTGTCCTTTTTTTTCTCCTCTAT
TCCTTATTTTTTTCTATCTATCTTCTTTACCTCTTTCCCCCTCCCCCTTA
TTTCTCCCCTTCCCCCCGTCCATTCCTCTCTTTAGTTTTATACTTCACCA
CACACCTACCATGTCTGCCTCTTCCCTTATTCAGTATTTTATTCTTTACA
CGTCTTCTCCTCTTCCCACC
TTTTTTTCCTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGAAAGATATTG
GGTAGATCACATAGATTCAAGTAAGACAGGAGAGCTACATCTGAAGAATT
GACAATCACAATCACTTTGTGCTCTGCATCCTTGACACCACTGCCCACAG
CCAGCTACCTCCCTGCCACTGCCTTGCCATGATCAGAAACCCAATCTTGG
GTTTCTAGACACTTGGCTCCTACAAGGTTCTACTGTAACTTCAGCTTTCA
CTAGCAACTCAGCTCAGGAGGGGCCATGTGATTAGCAGTTGTTCATGCAG
CTGCAGGCAAGCCATCGAAAGAACTTCCCATACTTGGAGTCTATCCCTTA
TCTTGGTATTAACACCCTGGAAAGACTGCGCGGATGCACAGTTCTTTAAA
GCCCAAAGGAAACTTATTTGTCCTCTGTCACATGCGCTTACATAAACCAC
ACCGACAAAAACTATTATTCACCCCCCCCCAAAAATTGACAAATATTCAA
TGTGGCGACCCCCCCCCTCCCCCCCTTTATTTTTCCCTTTCCCCTATCTT
TTATCTTCTTTTCCCCTCCTCCGCCCCCTCCCCTTCTCTTCTTCGCCTTT
TACTTTTTCCCCCACTATTTTCCTCACCTTCTCCCTTTTCCCTCCCCTCC
TTTCACGCTCCTTTTTTATCTTTTTTTTTCCCCCCCTTTTTCCCCCCATA
TTATTAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_p24.g1 MSMg01no443_p24.g1 CHROMAT_FILE:
MSMg01no443_p24.g1 PHD_FILE: MSMg01no443_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:46 2005
         (333 letters)



>mm_chr9_99875827_99876559
          Length = 733

 Score =  644 bits (333), Expect = 0.0
 Identities = 333/333 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attggaaagatattgggtagatcacatagattcaagtaagacaggagagctacatctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attggaaagatattgggtagatcacatagattcaagtaagacaggagagctacatctgaa 260

                                                                       
Query: 61  gaattgacaatcacaatcactttgtgctctgcatccttgacaccactgcccacagccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaattgacaatcacaatcactttgtgctctgcatccttgacaccactgcccacagccagc 320

                                                                       
Query: 121 tacctccctgccactgccttgccatgatcagaaacccaatcttgggtttctagacacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacctccctgccactgccttgccatgatcagaaacccaatcttgggtttctagacacttg 380

                                                                       
Query: 181 gctcctacaaggttctactgtaacttcagctttcactagcaactcagctcaggaggggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcctacaaggttctactgtaacttcagctttcactagcaactcagctcaggaggggcc 440

                                                                       
Query: 241 atgtgattagcagttgttcatgcagctgcaggcaagccatcgaaagaacttcccatactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtgattagcagttgttcatgcagctgcaggcaagccatcgaaagaacttcccatactt 500

                                            
Query: 301 ggagtctatcccttatcttggtattaacaccct 333
           |||||||||||||||||||||||||||||||||
Sbjct: 501 ggagtctatcccttatcttggtattaacaccct 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)