Query= MSMg01no444_g22.b1 MSMg01no444_g22.b1 CHROMAT_FILE:
MSMg01no444_g22.b1 PHD_FILE: MSMg01no444_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:20 2005
(407 letters)
>mm_chr9_76641418_76642224
Length = 807
Score = 748 bits (387), Expect = 0.0
Identities = 404/411 (98%), Gaps = 4/411 (0%)
Strand = Plus / Plus
Query: 1 aaacattgaagcagaagctgaaaggaagatggaattgaaaaaatactatatgtcaattag 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 197 aaacattgaagcagaagctgaaaggaagatggaatttaaaaaatactatatgtcaattag 256
Query: 61 acaactcaaggggtgactttacaagtagattgaatcaaacaaaagacagactataaggat 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 acaattcaaggggtgactttacaagtagattgaatcaaacaaaagacagactataaggat 316
Query: 121 ttagagacaaaacagaagataaagaagacctaaacaaagaatatgaaaaaaaaa-ttttt 179
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 317 tcagagacaaaacagaagataaagaagacctaaacaaagaatatgaaaaaaaaatttttt 376
Query: 180 taaagtacaaaagaggatcattcaggaaatgtgggacagcaccaaaaat---aaaaaaaa 236
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 377 taaagtacaaaagaggatcattcaggaaatgtgggacagcaccaaaaataaaaaaaaaaa 436
Query: 237 aattgactctgaattataagtgtagatgtgattacatgagatagagcatcgtcaaggtag 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aattgactctgaattataagtgtagatgtgattacatgagatagagcatcgtcaaggtag 496
Query: 297 tgtgtgtggctgtaggctacaatttgttcttattcattcccctcctccactgttattccc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgtgtgtggctgtaggctacaatttgttcttattcattcccctcctccactgttattccc 556
Query: 357 ccatatacattccctcttcttcttgatctggcttattcccttatgccccac 407
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccatatacattccctcttcttcttgatctggcttattcccttatgccccac 607
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space: 317604
Effective search space used: 317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_g22.g1 MSMg01no444_g22.g1 CHROMAT_FILE:
MSMg01no444_g22.g1 PHD_FILE: MSMg01no444_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:20 2005
(537 letters)
>mm_chr9_76768466_76769401
Length = 936
Score = 978 bits (506), Expect = 0.0
Identities = 527/534 (98%), Gaps = 1/534 (0%)
Strand = Plus / Minus
Query: 4 gggatgcttcttaggttgttattagctggagtgggaggattacctcatctgtgatgtcat 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gggatgtttcttaggttgttattagctggagtgggaggattacctcatctgtgatgtcat 677
Query: 64 ttagaggaggcatgtggattataaatatctcccataagttaaaaccttccactatatcac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttagaggaggcatgtggattataaatatctcccataagttaaaaccttccactatatcac 617
Query: 124 atttcaatgtcatagagttctttttaatatccagcaaccattcagcaaaattactaggaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 atttcaatgtcatagagttctttttaatatccagcaaccattcagcaaaattactaggaa 557
Query: 184 aatctgggtttcatccttggatagcagacatgtcatagataataaaagatctagaatgta 243
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 556 aatctgggtttcatccttggatagcagacatgccatagataataaaagatctagaatgta 497
Query: 244 taatagtcaaaagagaaatcaccatgagcatgatgggttacccattcaacacccatatat 303
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 496 gaagagtcaaaagagaaatcaccatgaacatgatgggttacccattcaacacccatatat 437
Query: 304 atgcatacgtgtatgtgtgttagctctgcattaaacatttattcagcattatcatttcaa 363
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 436 atgcatacgtgtatgtgtgttagctctgcattaaacatttattcagcattttcatttcaa 377
Query: 364 tcatctttgaataccaacactctatttggcaataaaaagttgttataatagtaataattt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcatctttgaataccaacactctatttggcaataaaaagttgttataatagtaataattt 317
Query: 424 ttacagtaatgatatggctctttggaaaaaaaatcccactttggggagcttttatctaat 483
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 316 ttacagtaatgatatggctctttgg-aaaaaaatcccactttggggagcttttatctaat 258
Query: 484 gtattatattttgtgaaataaaatcatttgtttgatatggtacagccatgaatt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gtattatattttgtgaaataaaatcatttgtttgatatggtacagccatgaatt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space: 488002
Effective search space used: 488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
