BAC Information

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BAC

Clone NameMSMg01-444J01
Chromosome9 (Build37)
Map Location 46,159,699 - 46,159,858
singlet/doubletsinglet
Overlap genenone
Upstream geneFxyd6, Fxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722
Downstream geneEG667890, 2900052N01Rik, D930036J05
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444J01.T7 (MSMg01no444_j01.b1)MSMg01-444J01.TJ (MSMg01no444_j01.g1)
ACCAG533702AG533703
length734759
length of high quality
(start - end)
---158 (79 - 236)
definitionCHROMAT_FILE: MSMg01no444_j01.b1 PHD_FILE: MSMg01no444_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:30 2005CHROMAT_FILE: MSMg01no444_j01.g1 PHD_FILE: MSMg01no444_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCCAAACCGCGGAANN
CNNCAAACCTTTTTCAGAAAATTGNANAAAATGGCCAAACCATTACTCAG
AGAACACCTTTTTTTCAATAATAACTGCCTAACTCTATGCATAATTGGTA
TCTCATGATCAAAACACTTGTTATTAGAACATGTAATGAAAGGGTTTCTA
GCTTCATCTCTGCTGCTGTGATAAAANAAAATATTANNCCCCCGACCCGT
TTCCCCCCCCTGTAAAAAATTTTGCGGGCCCGGCCTTAATAACGGAACCT
CACNTAAATAGTTTCCCCAGAAATACCGGCGGGNAAAATTCCCTAATCCA
CCTTATTTTCTCACCCAATAAACCAAAGGAAAAGGCCAGGAAAGGCCCCC
CAAGAAAGGGGGAACCCCCCTGGGNGGCCCCCCCCTTGGTCCCCCTAAGA
AAAGTGCCCCCCCAAATTTTTAAAAGGGCCAAGGGTTTAGGGCCCCCAAT
TGGAAAAAAAGAAAATTTTTTTTATTCCCCAAAACTTCCTTTTCCCAAAA
TTTAAAGGGGCGGGGGCCCTTTGAAGAAGCCCGGGTTTTTTTCTTTGGGG
AAACCCCCTCTAAAAAAAAACACCCTCTTTAATAAAAAAAAATCGCGCGC
CTTAATTTATTTTCCCCAAAAAACCCCCCCCACAAATTGTGGGGCCCCTA
AAACAAACACCCGGTTTGGGGTTTTTCGCAACAA
NNNCCCGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCGCGAAATTCCATAGGATGGGCTTACAGATGTGC
TACCGGGGTGAGAGTCAAAATATTTAACAACAGAATGGTATCAGCTTTGA
CTAATGGGATGGAAACCCCACATGAGCTGGTCAGGGTCCTAGAGACCTTC
TGAACTGTGTCAGGCGTTAACCCTTCAATTGCTGGGCTNNACGGAGGCAT
GTTTNGGGTGAGCTGACGGTACCTGGAAAGGNCTCTCCACGTTCCAGACC
CAAGANCGGGGGGCTTTTTTTTTTTTGTGNNNNNANNATGCACACAGNGA
CNAGGCNCTGGTGTCTGACATGGCCTTTACCCNTGTGCTGAAAGAATGAG
NAGGNNNNTCTTCTGGAACCCTTGGATTAAATTGGGGGAGAAAACCGACT
ACAACCGAAGACTCCTTTGCCTGGGGGGGTGGGNGGCCTGGGGCAGGTGN
CAATTGAAGGGCCCAAAAATCCCCGGGAAATCTGGTCCCTTTTTTAGGTT
CGGGGGGGGTGGTTACCCTCGNCCCAAAAAAAGCCCCCCGGGTTTTTGGG
GGCCATACGAACGAAAAAACTCCCCCCCNNCAAAAAAAAAATTTTTTGCG
CGTTTTTAAAAAAAAAACCAACAAATTCCTCGTCGCTTTTTTTTTTTTCT
CTTGTTCCCCATAAAAAAATCCTTCCAACCCCCCCTTTTTTCTGCCTCAT
CTTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_j01.g1 MSMg01no444_j01.g1 CHROMAT_FILE:
MSMg01no444_j01.g1 PHD_FILE: MSMg01no444_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:30 2005
         (158 letters)



>mm_chr9_46159499_46160058
          Length = 560

 Score =  290 bits (150), Expect = 3e-83
 Identities = 157/160 (98%), Gaps = 2/160 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggatgggcttacagatgtgctaccggggtgagagtcaaaatatttaacaacagaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggatgggcttacagatgtgctaccggggtgagagtcaaaatatttaacaacagaatgg 260

                                                                       
Query: 61  tatcagctttgactaatgggatggaaaccccac--atgagctggtcagggtcctagagac 118
           ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||
Sbjct: 261 tatcagctttgactaatgggatggaaaccccccgcatgagctggtcagggtcctagagac 320

                                                   
Query: 119 cttctgaactgtgtcaggcgttaacccttcaattgctggg 158
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctgaactgtgtcaggcgttaacccttcaattgctggg 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 560
Length adjustment: 8
Effective length of query: 150
Effective length of database: 552
Effective search space:    82800
Effective search space used:    82800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)