Query= MSMg01no444_j06.b1 MSMg01no444_j06.b1 CHROMAT_FILE:
MSMg01no444_j06.b1 PHD_FILE: MSMg01no444_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:31 2005
(418 letters)
>mm_chr9_117954495_117955312
Length = 818
Score = 547 bits (283), Expect = e-160
Identities = 299/311 (96%), Gaps = 11/311 (3%)
Strand = Plus / Minus
Query: 5 gaattccacgtagccttgcgctagctacagtacagaaccctgtgatgaaatgtacttaca 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaattccacgtagccttgggctagctacagtacagaaccctgtgatgaaatgtacttaca 252
Query: 65 aaaccagccagctagctttgaagtttgatttttctggataaacggc-----------atg 113
|||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 251 aaaccagccagctagctttgaagtttgatttttctggataaacggcactgtatttaaatg 192
Query: 114 gatcaagataatgctaacatgtaacatttaagaaacttgttcataactactcatagatag 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gatcaagataatgctaacatgtaacatttaagaaacttgttcataactactcatagatag 132
Query: 174 aaaatatagtcacagaaattattgcactaaatgattgagtctgagactattagatttatt 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 aaaatatagtcacagaaattattgcactaaatgattgagtctgagactattagatttatt 72
Query: 234 taatcaagctttactgcacaatacccagagagtgactgatctattctaatcctctaacct 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 taatcaagctttactgcacaatacccagagagtgactgatctattctaatcctctaacct 12
Query: 294 aatctggctac 304
|||||||||||
Sbjct: 11 aatctggctac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space: 330881
Effective search space used: 330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_j06.g1 MSMg01no444_j06.g1 CHROMAT_FILE:
MSMg01no444_j06.g1 PHD_FILE: MSMg01no444_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:31 2005
(531 letters)
>mm_chr9_117762797_117763727
Length = 931
Score = 1017 bits (526), Expect = 0.0
Identities = 529/530 (99%)
Strand = Plus / Plus
Query: 1 acttctgtttcgggggctgctgttttgcaagacacaccagctagcggctgtaatcaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttctgtttcgggggctgctgttttgcaagacacaccagctagcggctgtaatcaacaa 260
Query: 61 cagctatggcactaatgccacagtgccccagaccatcccatggcgctgatggtgactggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctatggcactaatgccacagtgccccagaccatcccatggcgctgatggtgactggc 320
Query: 121 taccaagaacagcaggaacactggcagcttcccatcaagctcaggggcaacagagcaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taccaagaacagcaggaacactggcagcttcccatcaagctcaggggcaacagagcaatg 380
Query: 181 acagcaatttaccttttgaggtctaagtatgccatgtggcacacaaccccttcctggcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagcaatttaccttttgaggtctaagtatgccatgtggcacacaaccccttcctggcta 440
Query: 241 ctttacatgaactggtggttatttatactacaaaattgcaacaagttcgattatgttaaa 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcacatgaactggtggttatttatactacaaaattgcaacaagttcgattatgttaaa 500
Query: 301 attttcaagatttagggtgaggtcaaaagagttgcaatccaatattttgtgaccctggct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attttcaagatttagggtgaggtcaaaagagttgcaatccaatattttgtgaccctggct 560
Query: 361 tagcaagctgaagtgaaatccttaagcccggggtttgcccttcttgaaaaccgactggtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagcaagctgaagtgaaatccttaagcccggggtttgcccttcttgaaaaccgactggtt 620
Query: 421 tggctaattaccaatgtgtctttaacctcacagtgtgttcttgttttttattctattgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggctaattaccaatgtgtctttaacctcacagtgtgttcttgttttttattctattgtg 680
Query: 481 tccacgtacgtgtgcacatgtgtaccaagtcccaggagagagcatcagat 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccacgtacgtgtgcacatgtgtaccaagtcccaggagagagcatcagat 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
