Query= MSMg01no445_d04.b1 MSMg01no445_d04.b1 CHROMAT_FILE:
MSMg01no445_d04.b1 PHD_FILE: MSMg01no445_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:19 2005
(179 letters)
>mm_chr9_6570837_6571416
Length = 580
Score = 317 bits (164), Expect = 2e-91
Identities = 174/178 (97%), Gaps = 3/178 (1%)
Strand = Plus / Plus
Query: 1 aattgaatttattaacagtatcacaagataaaacaaaacttcaatgttttcgaatgtgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattgaatttattaacagtatcacaagataaaacaaaacttcaatgttttcgaatgtgta 260
Query: 61 tatctaggagtgctatatctgatcatatcatttttttgatgactagaataataagttgca 120
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 tatctaggagtgctatatctaatcatatcatttttt-gatgactagaataataagttgca 319
Query: 121 ttgtggctgcagtaatttatatttctaccagcagtaatagggtttttt--ccctatcc 176
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 320 ttgtggctgcagtaatttatatttctaccagcagtaatagggttttttttccctatcc 377
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 580
Length adjustment: 8
Effective length of query: 171
Effective length of database: 572
Effective search space: 97812
Effective search space used: 97812
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no445_d04.g1 MSMg01no445_d04.g1 CHROMAT_FILE:
MSMg01no445_d04.g1 PHD_FILE: MSMg01no445_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:19 2005
(540 letters)
>mm_chr9_6749102_6750041
Length = 940
Score = 882 bits (456), Expect = 0.0
Identities = 486/497 (97%), Gaps = 3/497 (0%)
Strand = Plus / Minus
Query: 44 tggtcttctgagaacatggcaagcatgtacccttcaggaaaaatacataaatataataaa 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 tggtcttctgagaacatggcaagcatgtacccttcaggaaaaatacataaatataataaa 881
Query: 104 aatgaaaacatcaatcaaaataaaaaaaatagcacaagtagcattggttggtgacaccag 163
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 880 aatgaaaacatcaatcaaa--aaaaaaaa-agcacaagtagcattggttggtgacaccag 824
Query: 164 ttctaagaatactataaattataataaacaagttaataatttattaacaataatgtgttt 223
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct: 823 ttctaagaatactataaattataataaacaagttaataatttatttacaatactgtattt 764
Query: 224 aataatttaataacaaataatatctttactaaatagctttctgctcacagtcattcctca 283
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 aataatttaattacaaataatatctttactaaatagctttctgctcacagtcattcctca 704
Query: 284 gctttgacaaatgaatggtggtaatgcattatgtgtacataagagtcaaaatgtccacag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gctttgacaaatgaatggtggtaatgcattatgtgtacataagagtcaaaatgtccacag 644
Query: 344 aaactttgtcaaagttttcacttttctgtaaatctgaaattggttccagcatttattgta 403
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aaactttgtcaaagttttgacttttctgtaaatctgaaattggttccagcatttattgta 584
Query: 404 aaaaatgaaaacttaagacaattataacatttaagacatttgtagcttcactatagtctc 463
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 583 aaaaatgaaaatttaagacaattataacatttaagacatttgtagcttcagtatagtctc 524
Query: 464 aatttagatgaaaatataagaatggaanattatatatcaatcaagagaattaaaaacgta 523
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 523 aatttagatgaaaatataagaatggaaaattatatatcaatcaagagaattaaaaacgta 464
Query: 524 atatattgttgctgtca 540
|||||||||||||||||
Sbjct: 463 atatattgttgctgtca 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
