BAC Information

Click to search

BAC

Clone NameMSMg01-445D23
Chromosome9 (Build37)
Map Location 38,322,757 - 38,323,275
singlet/doubletsinglet
Overlap genenone
Upstream geneBC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907
Downstream geneOlfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445D23.T7 (MSMg01no445_d23.b1)MSMg01-445D23.TJ (MSMg01no445_d23.g1)
ACCAG534223AG534224
length743752
length of high quality
(start - end)		519 (65 - 583)492 (66 - 557)
definitionCHROMAT_FILE: MSMg01no445_d23.b1 PHD_FILE: MSMg01no445_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:23 2005CHROMAT_FILE: MSMg01no445_d23.g1 PHD_FILE: MSMg01no445_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTATACGACTCCTATAGGTACAGAATACGCGGAATTCCATCCTTC
GTCACATAAAAGTCATTGCTTCAGCCCTGGCCTGATATGTGGAGAACCAT
TTCCAATCTAGAGCTAACCTCATCTAGCTACAACTGTTATGGCTTCAGGA
CCAAAATATTTTTCCAAATCTAATCAAAATTTAAATTTATCCAGATTCCC
TGAGTGACTAGAAACCTGTGCTTGCTATAGGAAAACAATCAATACATATC
TGAGAGATGATACTTAGGATGAACATTTATTGACTGTGACATTGTATCAC
TGTGTCTTCTGTTACTTTTAATACCTCATGCAATCTTCTCCAGGACATTC
TTCTGTGAATTTCATTTGATTTTTAGAATTGCATGATATTAAATTAACGG
ATACTCCTGAAATCCTAGGACTTCACTTCAATGTCAAACCAGCCACAGGA
TAATGTCCAAGTTACTAAAGGAAATCACTGTGTCATATCTTTAATATGTG
CAAGGAAAACAGTTATATATATAAACAGAATGTAGTATATTGGTTGCTGT
GGCTCATAATTTTCAAAATCATAGAGCTACCAGATAAATTTGCAAAATCA
TTCAAATGTTAAACATACTTTAGCCTGGTGGCACATACCTTTAATACCAG
CACTTCGGAGGCAGACACAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGT
CTTAAGAGTGAGTTCCAGGACAGCCAGGGTTACACAGAGAAAN

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACCTGAGGAATATCGAATGGCTGAGAAATACCT
GAAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGGTAAAAAATTC
AGGCGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAATGGGACATAGTACTACTGGAGGATCCCAAAATAAC
TCTCCTGGGCATATATCCAGAAAATGTTCCAACTAGTAAGAAAGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTACAATAGCCAGAATGTGAAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
TTACACAATGGAGTACTACTGAGCTATTAAAAAGAATGAATTGATGAAAT
TCCTAGGCAAATGGTTGGACCTGGAGGGCATTATTCTGAGTGAGGGAATC
CAATCACAAAATAACTCACATGATATGTACTCACTGATAAGTGGATATTA
GCCCAGAAACTTAGAATACCCCAGATATAAGTTACCATTTGCAAACACCT
GAAACTCCCGAAAGAACGAAACAAAGTGTGGAAACTTTGCCCTTCTTATA
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_d23.b1 MSMg01no445_d23.b1 CHROMAT_FILE:
MSMg01no445_d23.b1 PHD_FILE: MSMg01no445_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:23 2005
         (519 letters)



>mm_chr9_38322557_38323475
          Length = 919

 Score =  942 bits (487), Expect = 0.0
 Identities = 511/519 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgcttcagccctggcctgatatgtggagaaccatttccaatctagagctaacctcatc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 719 attgcttcagccctggcctgatatgtggagaaccatttccaacctagagctaacctcatc 660

                                                                       
Query: 61  tagctacaactgttatggcttcaggaccaaaatatttttccaaatctaatcaaaatttaa 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 659 tagctacaactgttatggcttcaggaccaaaatattttttcaaatctaatcaaaatttaa 600

                                                                       
Query: 121 atttatccagattccctgagtgactagaaacctgtgcttgctataggaaaacaatcaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 atttatccagattccctgagtgactagaaacctgtgcttgctataggaaaacaatcaata 540

                                                                       
Query: 181 catatctgagagatgatacttaggatgaacatttattgactgtgacattgtatcactgtg 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 catatctgagagatgacacttaggatgaacatttattgactgtgacattgtatcactgtg 480

                                                                       
Query: 241 tcttctgttacttttaatacctcatgcaatcttctccaggacattcttctgtgaatttca 300
           ||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tctcctgaaacttttaatacctcatgcaatcttctccaggacattcttctgtgaatttca 420

                                                                       
Query: 301 tttgatttttagaattgcatgatattaaattaacggatactcctgaaatcctaggacttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tttgatttttagaattgcatgatattaaattaacggatactcctgaaatcctaggacttc 360

                                                                       
Query: 361 acttcaatgtcaaaccagccacaggataatgtccaagttactaaaggaaatcactgtgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 acttcaatgtcaaaccagccacaggataatgtccaagttactaaaggaaatcactgtgtc 300

                                                                       
Query: 421 atatctttaatatgtgcaaggaaaacagttatatatataaacagaatgtagtatattggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 299 atatctttaatatgtgcaaggaaaacagttatatatataaacagaatgtagtatattggc 240

                                                  
Query: 481 tgctgtggctcataattttcaaaatcatagagctaccag 519
           |||||||||||||||||||||||| ||||||||||||||
Sbjct: 239 tgctgtggctcataattttcaaaagcatagagctaccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |