BAC Information

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BAC

Clone NameMSMg01-445K17
Chromosome9 (Build37)
Map Location 81,723,693 - 81,724,207
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666534, LOC100039038, Htr1b, LOC671392
Downstream gene4930486G11Rik, LOC100039085, Irak1bp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445K17.T7 (MSMg01no445_k17.b1)MSMg01-445K17.TJ (MSMg01no445_k17.g1)
ACCAG534546AG534547
length730738
length of high quality
(start - end)
244 (62 - 305)516 (68 - 583)
definitionCHROMAT_FILE: MSMg01no445_k17.b1 PHD_FILE: MSMg01no445_k17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:57 2005CHROMAT_FILE: MSMg01no445_k17.g1 PHD_FILE: MSMg01no445_k17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
ACCTTGACAATACCAAATGGAAGAGAAGCACCTGAAAAAATGCTCAACAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG
GCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCA
GGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTG
GATATATTTTTTTCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCC
AGAATATGCCCCAACTGGTAAGGAGGACACATGCTCCACTATGTTCATAG
CAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCA
ACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTA
CTCAGCTATTATAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGG
ACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCA
CACCATATGTACTCACTTGATAAGTAGATATTATCCTCTTTTCTATGATA
CCCTAGATATAAGATACCATTTCCTAAACACATGAAACTCCAGACAAATG
AATAACGAAGTTGTGACACTATGCCCCTTC
AGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGAATATCCTTTCTTAAGATAATAAGCTGGCCT
ACAAGGATGCTGTTCTGCTCTCTAAGATAACTGAGTTATAGATGCTATTA
GCTCTTCCTTGGGGTAATCCTCCATGACAAATTCTAATTCCCTCCTACAC
TCGCTCATCCCCATCTTCCAAAGTATCCCTACAGTCGGCTGCATTACTAA
GAAAGGCAAGAGCCACATTTAGGTTTTAATATAAAGATTGTCTTACATAG
GCCCTATATTGTATTGCCAAGGGTAACTATCCAGAAGTGACTTTAAGGAT
ACTGCCAACCTATGACTGAGTTGGTAAAACAACTTTGCTCAGTGGCAGCC
TCAGGCAGAGCCTACTCTGCCTATGTCTCCCTCTAGCTTCATATTGGCCA
CTTCATGCCAGCAGTTCTCATTAAATGACAAGAGTAAGAAAAGTCAGTTG
CAAGTCTTGCATTGACATCTTTTCAAGAGTAAAAGAACACCATCAGTTTG
TGTTAGGCCAGCCTGAGCTTTGCATGTGGGGATGCTTTCTATTTAAGTTT
ACTTAGAATATATCCAGTATAATAATGGAACTTATGGATATATCTCCATG
AATTTTTATATGTGTACATTAGATGCCTTGTTACAATCATTTTTTTTTGG
GATATTTCTTTATTTTTGGGCCCCTTACATTCCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_k17.g1 MSMg01no445_k17.g1 CHROMAT_FILE:
MSMg01no445_k17.g1 PHD_FILE: MSMg01no445_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:57 2005
         (516 letters)



>mm_chr9_81723493_81724407
          Length = 915

 Score =  920 bits (476), Expect = 0.0
 Identities = 506/516 (98%), Gaps = 1/516 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatatcctttcttaagataataagctggcctacaaggatgctgttctgctctctaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaatatcctttcttaagataataagctggcctacaaggatgctgttctgctctctaaga 260

                                                                       
Query: 61  taactgagttatagatgctattagctcttccttggggtaatcctccatgacaaattctaa 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taactgagttatagacgctattagctcttccttggggtaatcctccatgacaaattctaa 320

                                                                       
Query: 121 ttccctcctacactcgctcatccccatcttccaaagtatccctacagtcggctgcattac 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccctcctacactccctcatccccatcttccaaagtatccctacagtcggctgcattac 380

                                                                       
Query: 181 taagaaaggcaagagccacatttaggttttaatataaagattgtcttacataggccctat 240
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagaaaggcaaaaggcacatttaggttttaatataaagattgtcttacataggccctat 440

                                                                       
Query: 241 attgtattgccaagggtaactatccagaagtgactttaaggatactgccaacctatgact 300
           |||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attg-acagccaagggtaactatccagaagtgactttaaggatactgccaacctatgact 499

                                                                       
Query: 301 gagttggtaaaacaactttgctcagtggcagcctcaggcagagcctactctgcctatgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gagttggtaaaacaactttgctcagtggcagcctcaggcagagcctactctgcctatgtc 559

                                                                       
Query: 361 tccctctagcttcatattggccacttcatgccagcagttctcattaaatgacaagagtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 560 tccctctagcttcatattggccacttcatgccagcagttctcattaaatgataagagtaa 619

                                                                       
Query: 421 gaaaagtcagttgcaagtcttgcattgacatcttttcaagagtaaaagaacaccatcagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaaaagtcagttgcaagtcttgcattgacatcttttcaagagtaaaagaacaccatcagt 679

                                               
Query: 481 ttgtgttaggccagcctgagctttgcatgtggggat 516
           |||||||||||| ||||||| |||||||||||||||
Sbjct: 680 ttgtgttaggccggcctgagttttgcatgtggggat 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 915
Length adjustment: 10
Effective length of query: 506
Effective length of database: 905
Effective search space:   457930
Effective search space used:   457930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)