BAC Information

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BAC

Clone NameMSMg01-445N05
Chromosome9 (Build37)
Map Location 63,038,958 - 63,039,349
singlet/doubletsinglet
Overlap geneMap2k5
Upstream geneSpesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b, Cln6, Calml4, Pias1, LOC100039976, Ppia-ps9_818.1, Lbxcor1
Downstream gene2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009, Smad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445N05.T7 (MSMg01no445_n05.b1)MSMg01-445N05.TJ (MSMg01no445_n05.g1)
ACCAG534664AG534665
length757777
length of high quality
(start - end)
522 (35 - 556)252 (67 - 318)
definitionCHROMAT_FILE: MSMg01no445_n05.b1 PHD_FILE: MSMg01no445_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:10 2005CHROMAT_FILE: MSMg01no445_n05.g1 PHD_FILE: MSMg01no445_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTGAT
GTTTCCGCCAGATCACCTGGCCATGCACATAACAGTGTCAGACTCTCTCT
GTGTTTGTAGAATGACTTTACAGACTCAGGTACCCAATATACAGCTTTAA
AATTGTTGTTCATGTCATTCTGGAGAGTAAATATGAAACTCGAGGTTTAA
TTCAGACCATTAAAATCTCAGGTTCAAGCCGGGCGGTGGTGGCACACGCC
TTTAAACCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAG
GTCAGCCTGGTCTACAAAGTGAGTTCCAGAACAGCCAGGGCTACACAGAG
AAACCCTGTCTCGAAAAAACCAAAAAAACAAAAACAAAACAAAACTCAGG
TTCTCAGGTTCAGAATACAGTTCAGTGTGTAGCTGCTAAGTTCCGCTCTG
TTGTTTTGCACATAGCTGTTTTTATGCCCTAAGCAAAAGTCTTAGGAAGC
TGGACCAAGGAATTTTCATAATGCTTGCATGTTAAGGGCTAAAAGCAATA
TGGCTGGCATAGTTTTCTGGGGGACAGGACTTCAACTAGGCATGTTGCTT
CTCCATAGCTGTAATTTCAGTATTCAAGAGATGGCTCTCCAGCTAACAGC
AAGTACTGCTCCTTATAGGACCCAAGTCAGTTTCCCGACCTATAATCAGG
CCAGTTCCAACTTGCCCATAAATCCCTGAGAACGGATTCTTAAACCTTCT
TTATTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGATGCAATGCTACCTGACAGGAAGAGAGCATGA
TCAGGTATTTCTTGTTTGCTCTATCCCTACTGATGTGGCTGGCTTTAGCA
GTAGCTACCTCTCTCTATTATTACACAGCTCCTGTTAGGAACTCCTTTCT
TTCTGGATCTAACTTATGTTGGGTTCCAGCAACAATACAGACATAAAATT
CTCTCTGTTTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTTTTTTTTTTTCTCCGANGCCGCACTCTGAGTGTCGCATCATCCT
TTCTTGATTTCCTACACTCTGCTCGCATTTCCACGAATGTCTCTTTCTTG
CACGCATTTTCGTTTGAACCCTCTGAGGGAAAGATTGCTTCCTATTTGAC
GCTCAGTCTTTTTTTTTCCTTTTGTCTTGAGTCGTTCTACGTACCTACCT
TTTATTAGGGATTGTCTCCAGCTACATGTCCAGAGGCTAGTTCCAAAGTT
CCCTCTATCTTCCCCCCTGCGCATGCATACTCTTGTATTCGCCTATTTGC
TACTTGGTGCTTCTATGGTACGGTTTCCCCTCACCGCCTGTTTGTTGAAT
GTCCTCCTCCTTGGCCGCCTGGCGTTGATCTACCGCCTCATCTCTGCCAA
GTTTTTCGCCCGCCAGTAGTACCCATATCCCGGTACTCCGTACTCCCTCC
CACGCGTTGCCCCCACACACTTGTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_n05.b1 MSMg01no445_n05.b1 CHROMAT_FILE:
MSMg01no445_n05.b1 PHD_FILE: MSMg01no445_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:10 2005
         (522 letters)



>mm_chr9_63038958_63039879
          Length = 922

 Score =  735 bits (380), Expect = 0.0
 Identities = 389/392 (99%)
 Strand = Plus / Minus

                                                                       
Query: 23  gccagatcacctggccatgcacataacagtgtcagactctctctgtgtttgtagaatgac 82
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 392 gccagatcacctggccatgcacataacagtgtcagactctctctttgtttgtagaatgac 333

                                                                       
Query: 83  tttacagactcaggtacccaatatacagctttaaaattgttgttcatgtcattctggaga 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tttacagactcaggtacccaatatacagctttaaaattgttgttcatgtcattctggaga 273

                                                                       
Query: 143 gtaaatatgaaactcgaggtttaattcagaccattaaaatctcaggttcaagccgggcgg 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gtaaatatgaaactcgaggtttaattcagaccattaaaatctcaggttcaagccgggcgg 213

                                                                       
Query: 203 tggtggcacacgcctttaaacccagcacttgggaggcagaggcaggcagatttctgagtt 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tggtggcacacgcctttaaacccagcacttgggaggcagaggcaggcagatttctgagtt 153

                                                                       
Query: 263 caaggtcagcctggtctacaaagtgagttccagaacagccagggctacacagagaaaccc 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 caaggtcagcctggtctacaaagtgagttccagaacagccagggctacacagagaaaccc 93

                                                                       
Query: 323 tgtctcgaaaaaaccaaaaaaacaaaaacaaaacaaaactcaggttctcaggttcagaat 382
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 92  tgtctcgaaaaaaccaaaaaaacaaaaacaaaacaaaactcaggttcttaggttcaaaat 33

                                           
Query: 383 acagttcagtgtgtagctgctaagttccgctc 414
           ||||||||||||||||||||||||||||||||
Sbjct: 32  acagttcagtgtgtagctgctaagttccgctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)