BAC Information

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BAC

Clone NameMSMg01-446D07
Chromosome9 (Build37)
Map Location 86,720,484 - 86,720,728
singlet/doubletsinglet
Overlap geneSnap91
Upstream gene9330154J02Rik, Tpbg, 2610018I03Rik, Pgm3, Rwdd2, Mod1, Prss35
Downstream geneC030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706, Tbx18, LOC671731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446D07.T7 (MSMg01no446_d07.b1)MSMg01-446D07.TJ (MSMg01no446_d07.g1)
ACCAG534956AG534957
length729752
length of high quality
(start - end)
247 (66 - 312)198 (118 - 315)
definitionCHROMAT_FILE: MSMg01no446_d07.b1 PHD_FILE: MSMg01no446_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:40 2005CHROMAT_FILE: MSMg01no446_d07.g1 PHD_FILE: MSMg01no446_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCGCTAAACGACTCACATATTCCGAGCGGGGCGGAANTCTTTTTA
ATTATCAAAATAGAAGTTGATGCTCATTAGATGGGTCATAAATTACCTAT
CAAGTATTAGAGCATGTTTCTGAAAGATAAAGTGGGGGCTCTTATAGTGA
TTTGGCTCACCAAACCCTTCATGGCTTTCTGCTGTGTGAACTTTCTCTCA
ACATTACTGAGACAGCATGACCCTGTTGCTCTCTTGTTATCCTTTCTACC
AAGTCTAGAATTCAGTCCCTAAGGTACTGTGTTTTAATTACAGTATGACA
AGGATTGTTTTCTTTCTTGTATATATATATATATGTATATATATATATAT
ATATATATACACCATGCTTCCTCAGAGGGCTCGACAGTCATTTGTCAATT
CATTCTGTCAGCAATTATCTGCTGACTCTGCAAATGGCAGCTTGGTAAAG
GACAGTCTACAGAAGAGATAGAGAAACCAACGAATAGCTTGGCTTCTGCT
CTAGAAATGTGTTTCTTTAAATTTGCATATGGTTAAAGTCATGCTCCGTC
TATACTCTCTCACATGAAAATTCTTCGAGTCACTCAACTTATAATTTTGT
TACCTCATACGTGTTTTTAATTTTCCTATGAAAAACGAAAATATATAATT
TTTTATTAGAGCCAATTCCCCTGGTGCCAACTACTCATTACCTTCTCGTT
GAAAGCGTGTGGCGAATCCCACTTTTTAN
TTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTACAGAAATACCTGATCTTTCCAAAACTTTTATCATGAATGGGTG
TTGGATCTTGTCTAACGCTTTTTCTGCATCTAACGAGATGATCATGTGGT
TTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCTT
ATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGTATT
TATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGA
GGATTTTTGCATTTAATTCTTAAGAGAAATTGGTCTGAAGTTCTCTATCT
TTGTTGGTTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGTCTTCATAA
AATGAGTTGGTTAGATTATTTTCTACTTCTATTTTGTGAAATATTTTGTG
CAGAACTGGAACTAGATCTTCCTTGAAGGTTTGGCATAACTCTGCACTAA
ATCTATTTGTCTCTTTTTTTTTTTTTGGTTGTGAGCACTTTTATTTACCG
CCTTCATTTCTTTATCTGTTACGCCATTGTATATTTTCTTCTTTTCTTTC
CTTCACCTAATTTTCGCTATTTTTCATCTTGCCCCATCAATTTCTTCCTT
CTTTCCATTTTTTTTTCTACTACTTGGTATACCCTCATTCCTTATTCTCT
TATTCATTCTCGTATCCTCTCTTTCTTACTCCTTTTTCTTCCTCTTATGT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_d07.b1 MSMg01no446_d07.b1 CHROMAT_FILE:
MSMg01no446_d07.b1 PHD_FILE: MSMg01no446_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:40 2005
         (247 letters)



>mm_chr9_86720284_86720930
          Length = 647

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgatgctcattagatgggtcataaattacctatcaagtattagagcatgtttctgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttgatgctcattagatgggtcataaattacctatcaagtattagagcatgtttctgaaa 260

                                                                       
Query: 61  gataaagtgggggctcttatagtgatttggctcaccaaacccttcatggctttctgctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gataaagtgggggctcttatagtgatttggctcaccaaacccttcatggctttctgctgt 320

                                                                       
Query: 121 gtgaactttctctcaacattactgagacagcatgaccctgttgctctcttgttatccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 gtgaactttctctcaacattactgagacagcatgaccctgttgctctcttgttatccttc 380

                                                                       
Query: 181 ctaccaagtctagaattcagtccctaaggtactgtgttttaattacagtatgacaaggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaccaagtctagaattcagtccctaaggtactgtgttttaattacagtatgacaaggat 440

                
Query: 241 tgttt 245
           |||||
Sbjct: 441 tgttt 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)