BAC Information

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BAC

Clone NameMSMg01-446N17
Chromosome9 (Build37)
Map Location 21,108,984 - 21,109,347
singlet/doubletsinglet
Overlap geneAp1m2
Upstream geneOlfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d
Downstream geneSlc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446N17.T7 (MSMg01no446_n17.b1)MSMg01-446N17.TJ (MSMg01no446_n17.g1)
ACCAG535452AG535453
length745755
length of high quality
(start - end)
241 (64 - 304)515 (63 - 577)
definitionCHROMAT_FILE: MSMg01no446_n17.b1 PHD_FILE: MSMg01no446_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:30 2005CHROMAT_FILE: MSMg01no446_n17.g1 PHD_FILE: MSMg01no446_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCCTAAATGCGAGAGAGCGCGCGGAATTCACTCTGTTTT
CANAGATGGCCTCAAACTCTTTTGTGTCCTGAATCCTGGGATCAAAGGCT
TTTCTTTTCTTTCCTCTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCT
GAGACAGGCTCTTATGTAGCTCAGTTTGCGTCTCTATATAGGACGACCCT
GAGCCCAATCCTCTTCCCTCCACTCTGGCCAGGGCGCATGTGTGCGTGCG
TGCGTGCGTGCGTGCGTGTGTGTGTGCATGTGTGCGTGCGTGCGTGTGTG
TGCGTGCTTGTTTGTGTGTGCATGCGTGCGTGTGTGCATGCGTGTGTGTG
TGCATGTGTGCGTGCGTGCGTGCGTGTGTGTGTGCATGTGTGCATGCATG
CGTGCGTGCGTGCGTGTGTGTGTGCTGGGATGGGACCCGGGGCACTGTCT
ATGCTGGATGAGCACATCACTCAGCTCTTTGAGGTTCTGTACTTCCATCT
TCACTGGTCTAGAATGTGAGACCCACCAGGGAGGGCACATGCCCAGTGGG
CAGACACCAAGTGGTCTGAGCTGGAGGCCAGGCCGCTCTCTCTCTGCTTT
CGAAGGGCCAGCTGTCTTTCCCTGCTGACACTCTGTGGTGGCTCTTTTTT
TTGCCCCCACAGACTCCTATATTTGAATCCTTGGTTCCACTTGGTATACC
TGTTTGGAAAGGCCCAGGATATGTGTCCCTTGTTGGAGTATTTGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCCAGGGGGCTAGCCCAATCCAATCAGCAAGTTCTAGGA
CAAGGAGAAATGCTATCTGGGGCAAAACCAAACCAAACAAAAATAGGGTG
GATGACACCGGAGGAAAGACATCTGACATTGTCCTTTAATGTCCATGAGC
ACATGTACACATGTATGCAAATGTATACACACACACACACAAACACACAC
ACACACAGAGTGAAATAGAACCAAACAAACAAGAACCAGGCAGGCTGGTG
GGCAAACATAGTGCTACATACGGGTAATCCCATCACTTGGGAGGTAGAAT
CAGGAGTTCAAGGTCATCTTCAGCTACTCAATGAGTCCGAGGAGGCCATT
GTGGGCTATATCCCATTCTATCTGAAAAGATTACACCAAAACACAAGAAA
CAGAAGCAGGACCCATACAAACAGAAATGAAGAGCAGAGGAACAGAAGGC
ATGACTCACACAGTAAAGTCCTTGCACAACAACATGAAGCCCTGAGTTCA
GATGCCCAGAACACATAAAAAGCAGACATGGGGTCCGCTGTGGTTTCGCA
CCCCTTTAATCCCTGCACATATGAGGCAGAGCAAGTGGATCTCTGAGATC
AAGGGTAGCCTGGTTGCATAGCAAGTCCAGGACCGCAAAAGTTATCTAGT
AAAAACTTGTCCCCCCAACAAATCAAGTCTAATACAAAAGCTAGGGATGG
GTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_n17.g1 MSMg01no446_n17.g1 CHROMAT_FILE:
MSMg01no446_n17.g1 PHD_FILE: MSMg01no446_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:30 2005
         (515 letters)



>mm_chr9_21108984_21109898
          Length = 915

 Score =  696 bits (360), Expect = 0.0
 Identities = 364/366 (99%), Gaps = 2/366 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagggggctagcccaatccaatcagcaagttctaggacaaggagaaatgctatctgggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ccagggggctagcccaatccaatcagcaagttctaggacaaggagaaatgctatctgggg 305

                                                                       
Query: 61  caaaaccaaaccaaacaaaaatagggtggatgacaccggaggaaagacatctgacattgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 caaaaccaaaccaaacaaaaatagggtggatgacaccggaggaaagacatctgacattgt 245

                                                                       
Query: 121 cctttaatgtccatgagcacatgtacacatgtatgcaaatgtatacacacacacacacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 244 cctttaatgtccatgagcacatgtacacatgtatgcaaatgtat--acacacacacacaa 187

                                                                       
Query: 181 acacacacacacacagagtgaaatagaaccaaacaaacaagaaccaggcaggctggtggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 acacacacacacacagagtgaaatagaaccaaacaaacaagaaccaggcaggctggtggg 127

                                                                       
Query: 241 caaacatagtgctacatacgggtaatcccatcacttgggaggtagaatcaggagttcaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 caaacatagtgctacatacgggtaatcccatcacttgggaggtagaatcaggagttcaag 67

                                                                       
Query: 301 gtcatcttcagctactcaatgagtccgaggaggccattgtgggctatatcccattctatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  gtcatcttcagctactcaatgagtccgaggaggccattgtgggctatatcccattctatc 7

                 
Query: 361 tgaaaa 366
           ||||||
Sbjct: 6   tgaaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)