BAC Information

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BAC

Clone NameMSMg01-446N18
Chromosome9 (Build37)
Map Location 94,718,144 - 94,718,557
singlet/doubletsinglet
Overlap geneSlc9a9
Upstream geneLOC674371, LOC384967, EG384968, 1190002N15Rik, EG667601
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446N18.T7 (MSMg01no446_n18.b1)MSMg01-446N18.TJ (MSMg01no446_n18.g1)
ACCAG535454AG535455
length745736
length of high quality
(start - end)
562 (61 - 622)414 (91 - 504)
definitionCHROMAT_FILE: MSMg01no446_n18.b1 PHD_FILE: MSMg01no446_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:30 2005CHROMAT_FILE: MSMg01no446_n18.g1 PHD_FILE: MSMg01no446_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCTATACGACTCACTATTTTCAGAGGATCCGCGGAATTCTCACCTGAT
GGCTACTGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAAT
CATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAG
TCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGA
TGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGT
ACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAG
TACTACCGTATTATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGAT
GCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTT
ATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGG
AATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCT
ATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGA
GGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATA
TGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGAATATCCAAGAT
ATTAGATACAATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGA
AGTGTGGACACTATGCCCCTCCTTAGAAATGGAACAAAACACCCT
NNNCCCCCCNNTNCCACCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGTGTTTC
CTTGCTTAATTGGAGAACCAAACCAACAATGTACATCAGCTAGCTATAAA
CCCTAAACTTCATGAAGAGTTATGGGCTATATTTTTCCAACTGACTACAT
GTCTTTGTTGACTTCTTTTACATAAACATTTATTTCTGGTATTGAGTTTA
TCCAATTCAAGAACAGCAAATGTCTCAATACACTTTGAAATGGGGCTAAC
AGATTGTCAGATTTGCTGGTTTTGTGAAAAACTGTATATTTAAAACCAGT
AGTAGTTATTTCACACACACACACACACACACACACACACACACACACAC
AAACAGTGGTCTGAGGCAGTTAGGCCTTTTATTTATGTTCTGCTAAGCAG
AAGATCAGTTGAGACCCTTGGGCTGTGGATTATTGAAGCCGCCTTTTCCC
AGGTTAGAAGCTGTAGTGTTTCTGGGTTAGAAGGCACATTTATGGTATTT
AAGTCCACCCTTTTCCCTTTGCCTCGCCCCCGAAGCAGGCGGGTAATTCC
CGTGCCACACACTAATAACCGCTCACGCCCCCTTGTTATATAAACCCCAA
AACTCTTTCCCTCTCTTTTACATTCAACCGTTCCTTCTTTTTTCCAACGG
CCATATCATCCCCATTACTCTCTTAGTTCTTTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_n18.g1 MSMg01no446_n18.g1 CHROMAT_FILE:
MSMg01no446_n18.g1 PHD_FILE: MSMg01no446_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:30 2005
         (414 letters)



>mm_chr9_94718087_94718900
          Length = 814

 Score =  723 bits (374), Expect = 0.0
 Identities = 404/414 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtgtttccttgcttaattggagaaccaaaccaacaatgtacatcagctagctataaa 60
           ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 471 tgtgtgtttccttgcttaattggagaaccgaaccaacaatgtacttcagctagctataaa 412

                                                                       
Query: 61  ccctaaacttcatgaagagttatgggctatatttttccaactgactacatgtctttgttg 120
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 411 ccctaaacttcatgaagagttatgggatatatttttccaactgaccacatgtctttgttg 352

                                                                       
Query: 121 acttcttttacataaacatttatttctggtattgagtttatccaattcaagaacagcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 acttcttttacataaacatttatttctggtattgagtttatccaattcaagaacagcaaa 292

                                                                       
Query: 181 tgtctcaatacactttgaaatggggctaacagattgtcagatttgctggttttgtgaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 291 tgtctcaatacactttgaaatggggctaacagattgtcagatttgctggttttgtgacaa 232

                                                                       
Query: 241 actgtatatttaaaaccagtagtagttatttcacacacacacacacacacacacacacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 actgtatatttaaaaccagtagtagttatttcacacacacacacacacacacacacacac 172

                                                                       
Query: 301 acacacacacaaacagtggtctgaggcagttaggccttttatttatgttctgctaagcag 360
           ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 171 acacacacacacacagtggtctgaggcggttaggccttttatttatgttctgctaaggag 112

                                                                 
Query: 361 aagatcagttgagacccttgggctgtggattattgaagccgccttttcccaggt 414
           ||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 111 aagatcagttgagacccttgggctggggattattgaagccgcctttccccaggt 58


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)