BAC Information

Click to search

BAC

Clone NameMSMg01-449A13
Chromosome9 (Build37)
Map Location 91,277,288 - 91,277,609
singlet/doubletsinglet
Overlap geneZic4
Upstream geneLOC100039777, LOC100039925, EG434428, LOC621576, Zic1
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449A13.T7 (MSMg01no449_a13.b1)MSMg01-449A13.TJ (MSMg01no449_a13.g1)
ACCAG537104AG537105
length7361,078
length of high quality
(start - end)
322 (338 - 659)---
definitionCHROMAT_FILE: MSMg01no449_a13.b1 PHD_FILE: MSMg01no449_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:31 2005CHROMAT_FILE: MSMg01no449_a13.g1 PHD_FILE: MSMg01no449_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAAT
GCGCGGAATTCTATCTTCATGCCTAAACTCAAACTCTATCCCTCAACCCA
CAAAAACCTTCATTTGTAGGTTGCAATTGATTTTTTTTTACAAGTTATTT
TATGAAGAAAAAAAATAAAATAAAAAGAGGGAGGAGAGAGAAAAGTTTGG
GTTTTCCAAACGCTGGTGGAGTCAAAGGAGAGAGATCTGGGGACAAATAG
GGACACTGATTTGTTCATTATACATCTCCAATGTTTCCTAAGACTGTGCC
TTGTCCTGTGAAAATGGCAGCGGGCATCTTCTTCTTGAGGACCCTAGTGT
ACCAGCTCTACTACAGCGAGGGTGAGCACCATCAGTGGGCAGTGTGAGGG
AGACGGGTTCGCCTGATTTTTTGCCTAAGCCAAAGGCAGGTTACATGTAA
ACCTCTATTTAAATCTGAGCGCCAGTGCCACGGCGGAATGGAGACTGTTG
ATTATATCAGGGAGTCTTCCCTGCAAACCGGGAAAGAAGCGATCACAAAG
CCAACAGAGGCTCATCTTGTGTTCAGTCTTATGCTAGAGAAGTTTTAGCA
CCCCTGATCACCCCTAGGACCTTCAGTTGCTAAGATCACAGACACCTCCC
CCTTTCCTTTTCGAAACAATCTCAGCTGAGCCAGAGATTTGGGGTTCTGG
CTTCTGGGAGGGTCTGTGGTGTGAGTGGGGGTCATN
CTAGAGTATAGTGGACCATAATAGACAAGAAAGAACGAACCCCTTCCCAT
AAAGAGAGCGCGTCCNCCCGCAATCTTTCCCCTCTCCACCGTCGGACGTC
TATGGTGTCTAGATATATTAATTCGCTATATCCGACAATGATATGCGCTG
TCTCCCGTTCCCTGTTTCTTCCTCGCGCTGTGTTCCCCTCTGTCCATTTT
GCATTGCAACTCAGATCAGCAAGCGACTATAAGCGAGATCCTCTTGCTGT
GTGGAGCTCGTTCATCGGCCTGTGTCTACACGGCGTTGTGTGCTTTGTGA
TCTACTATTATCCTCTCCCTTCTCCTTGATAGGTGTTTGATGTAATTTCG
AATTGTCTCCATTGTATAAAATATTAATACTTAACGTGCGTAACATGCAT
CTACAACAATATAAAATAACAAAACAGAAGAATGTGTTAGAGATAAATAG
AAGGCACCACAGCATTCTACCACGTAGATTTCTGGTGACGTTGCGTATAT
GAGGGTGCGGCGCAATGCTCTCTTGAGAGATCAGGCTTGGCTGCGGAGAC
GGAGGAGAGAGTGAGAAGGTGCGATCGATATGAACCACGCGACAACTGGG
GTCTTTGACACGTTCACATGCATGTCACCCGTCTACATAGTCAAACCCAG
GAGTTAATACGCCACTCGCGCCCGGAATATCGAGTGCACTTTAATGAATG
AGGTGATCTTGTAGTGGAGGAACTGCGCTTAGAATCATATATTGTGGCGG
TGCACCCGAGATCGGTCGTACGCCGTGCATTAACTGTGCATATCATGCGA
ATTCAGTGCGCGCGGTGCGCGTGTTGAGCTAATGACTCTATGGGAGGAGG
CTCAGTTTATTCTGTGTACGGCGACACCCGTGCCGCGTTGTTGGCTGGCG
AGATAAACGATTTATCCATACAGTTACTTCCCAGACAATCAACATCGACT
AGCGCCGAGCCTCATCGAAATATACTATACACACTTCATAATACGCAGCA
ACCGAACGATCAGATGCTAATACTACCCAGCCGGTGATGTACGCCAGGAT
GGCGGCCGACTAGATCACGCGCGGGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_a13.b1 MSMg01no449_a13.b1 CHROMAT_FILE:
MSMg01no449_a13.b1 PHD_FILE: MSMg01no449_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:31 2005
         (322 letters)



>mm_chr9_91277088_91277809
          Length = 722

 Score =  592 bits (306), Expect = e-173
 Identities = 318/322 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaccctagtgtaccagctctactacagcgagggtgagcaccatcagtgggcagtgtga 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 aggaccctagtgtaccagctctactaccgcgagggtgagcaccatcagtgggcagtgtga 260

                                                                       
Query: 61  gggagacgggttcgcctgattttttgcctaagccaaaggcaggttacatgtaaacctcta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gggagacgggttcgcctgattttttgcctaagccaaaggcaggttacatgcaaacctcta 320

                                                                       
Query: 121 tttaaatctgagcgccagtgccacggcggaatggagactgttgattatatcagggagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaaatctgagcgccagtgccacggcggaatggagactgttgattatatcagggagtct 380

                                                                       
Query: 181 tccctgcaaaccgggaaagaagcgatcacaaagccaacagaggctcatcttgtgttcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccctgcaaaccgggaaagaagcgatcacaaagccaacagaggctcatcttgtgttcagt 440

                                                                       
Query: 241 cttatgctagagaagttttagcacccctgatcacccctaggaccttcagttgctaagatc 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 cttatgctagagaagttttagcacccctgatcacccccaggaccttcagttgctaagatc 500

                                 
Query: 301 acagacacctccccctttcctt 322
           ||||||||||| ||||||||||
Sbjct: 501 acagacacctctccctttcctt 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)