BAC Information

Click to search

BAC

Clone NameMSMg01-449H01
Chromosome9 (Build37)
Map Location 104,737,834 - 104,738,317
singlet/doubletsinglet
Overlap geneCpne4
Upstream geneEG384978, Nphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16, Acpp, LOC100040921
Downstream geneMrpl3, Nudt16, 1700080E11Rik, Nek11, Aste1, Atp2c1, EG434434, LOC664981, Pik3r4, E330026B02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449H01.T7 (MSMg01no449_h01.b1)MSMg01-449H01.TJ (MSMg01no449_h01.g1)
ACCAG537412
length746758
length of high quality
(start - end)		---576 (81 - 656)
definitionCHROMAT_FILE: MSMg01no449_h01.b1 PHD_FILE: MSMg01no449_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:04 2005CHROMAT_FILE: MSMg01no449_h01.g1 PHD_FILE: MSMg01no449_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

NNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACATTCACTAGGGCTCTA
TAACTAGGAACTGAACCAACAACACAGTCAATTGACTGTCACTACACCCT
TTAAATTCTGGGGTGATATCAGCTATTCTGTTTGAGATGTGGGACCCAAA
GCACATGTATAGTGTTGGTCGGGAAAAAAGATGCTACAGCCTTCTGGGGA
GAGACATTTAAGTGACATGCATTTAAGAAAGTTTAAATGGTGGCTGCAGA
GATGGCTTAGTGGCTCAGAGCACATATTGTTCTTGCACAAGATTCAAGTC
AATTCCTGGCACTCACATCAGGATCTAATACTTCTTGCCTCCAGAAGCAC
GTACACTCACGTGCACATTCCTCCACACCAACATACATGAAGACACAAAA
TTTAAAATAACAATACAAATTTTAATGTAAATATATCCCCATAGCCTACC
AATTTGTTATGAGAGTATATCTCTGGTAAACAAAACCACTGGCATGTTAA
GAAAATATAACAAACAGACCATTATTTTCAGTGCTGGGCATCTGTATGGG
ATTATATGAACACAGAGCCAGTATGGGATACTATGTCCTAAGTTACATTT
TGGAATGAGAATATAAATGGAGAGAGACAGGATGATCAGAAATCCAGTGG
GAACACAAGTATTCATAACATTGTTGAGGATAGGATCTCTTATCTAACTA
TTCAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_h01.g1 MSMg01no449_h01.g1 CHROMAT_FILE:
MSMg01no449_h01.g1 PHD_FILE: MSMg01no449_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:04 2005
         (576 letters)



>mm_chr9_104737342_104738317
          Length = 976

 Score =  936 bits (484), Expect = 0.0
 Identities = 484/484 (100%)
 Strand = Plus / Minus

                                                                       
Query: 93  ctattctgtttgagatgtgggacccaaagcacatgtatagtgttggtcgggaaaaaagat 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 ctattctgtttgagatgtgggacccaaagcacatgtatagtgttggtcgggaaaaaagat 917

                                                                       
Query: 153 gctacagccttctggggagagacatttaagtgacatgcatttaagaaagtttaaatggtg 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 gctacagccttctggggagagacatttaagtgacatgcatttaagaaagtttaaatggtg 857

                                                                       
Query: 213 gctgcagagatggcttagtggctcagagcacatattgttcttgcacaagattcaagtcaa 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gctgcagagatggcttagtggctcagagcacatattgttcttgcacaagattcaagtcaa 797

                                                                       
Query: 273 ttcctggcactcacatcaggatctaatacttcttgcctccagaagcacgtacactcacgt 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ttcctggcactcacatcaggatctaatacttcttgcctccagaagcacgtacactcacgt 737

                                                                       
Query: 333 gcacattcctccacaccaacatacatgaagacacaaaatttaaaataacaatacaaattt 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gcacattcctccacaccaacatacatgaagacacaaaatttaaaataacaatacaaattt 677

                                                                       
Query: 393 taatgtaaatatatccccatagcctaccaatttgttatgagagtatatctctggtaaaca 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 taatgtaaatatatccccatagcctaccaatttgttatgagagtatatctctggtaaaca 617

                                                                       
Query: 453 aaaccactggcatgttaagaaaatataacaaacagaccattattttcagtgctgggcatc 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aaaccactggcatgttaagaaaatataacaaacagaccattattttcagtgctgggcatc 557

                                                                       
Query: 513 tgtatgggattatatgaacacagagccagtatgggatactatgtcctaagttacattttg 572
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgtatgggattatatgaacacagagccagtatgggatactatgtcctaagttacattttg 497

               
Query: 573 gaat 576
           ||||
Sbjct: 496 gaat 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |