NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATC
CGCGGAATTCATAAAGATACCATCACAAGAGAAAACATAAATATCCACAG
TCAGTGAAACAAAACCGTCTGGTGTGAAATTTACCCTAATTTATCCTAAT
AGACTCCCATGAGTTTGTTATTAAACTAAAATCACCTTATTCTAAGCACA
CTGTGAATCATCATAAAAGATTCTGACCCTTAAAGATCATGAAAACTTCA
AGATTTTACTAATAAAGTTAAAAATCCTAGCTGTTGCGTTACTGGTTGAC
TTTGGTCTGTATTTTCTGGACTTCTGCTTTCCACGGATAACAATCAGGTA
GGATCTGGTCATAATTAGTGCTGTACATCTGGGAGGAGACAAATTCTTCT
TTGTTTTGGGGTTCAGGATAAACAGTGGCCATCTTTTCTTTGTATGCATC
TTGCACAATCTAAAAATAAGGAAGGCAAGTCATTATTGTCATAATGAGAA
GGTGATATTGAACACAAATCAAATTTTTATCCAGTTCCAAAGTTAATTTA
TAATTTGTACTAGAGAAAAAGCCACACACATGAGCAAAGAAAATGAAAAT
GCAGCTATGAATCAGATGTAGCAAGAGGAAGGGACACTAGCGACCGGGAA
TGCTCGGGAGTAGAGACTTCCGTGTGAACATTGTCACTTTTCTCAGAGAC
GACAGTCTTCAAAGTCTTGACAGGGCTGAGCTGAATAACTTGGACTGCGA
A

NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTTTTCCTTTTCGACGGT
TATTCCACTCAGAAGAGGAGTGTGCTTACTTCATTCCTCTAGGGAACCAA
TTCTCAATGGCTTCTGCCAGCCTTGCTTATGACTCCCCAAGGGCCCCCAG
TGGGGTTTTCTCTTTAGCGACAGTAGAAAAAAATGGCTTCAAGAGAACTA
CATTTCCCACAGTGTCCCTGTTTTTATGCTTACCCAGAAGGTTCTTCAGC
TGCATGTGAGAGTAGGGAGGGAGTTTTTTTTCTAAAATCTGACAGCACAA
TGGTAGCCTTTAATTACTAGACAGAAAGCCTTTGCTGGCTGCTTCCAGAC
TGCTTTATTTATCAGCCTCGTAATTGACTAAAGAGCGCTGTGAGTTTTAA
CCCAAGCAGGCAAGTTATATTTAACAAGGAGTGATATGGATTTATGGTTA
ATCTCTGTGACCGGTCCCATTGGATTGTCTAGATGAAAATGACTTGGGCT
TCACAAAAGCTGTAATTAGAGAGAGGGAAAGAGAGCTATCACGATGCGCC
TAATTCATTTTAACGGAAGTGATAAAACATAGGAATCTTATAGCTTCGGA
AAATAATTGCACTCCCTTTTATTCCACATGTTTTATTTAATAAAAAAAAT
CCCGCTCATGGGTTACTTTCTGGCGTCTTTCGGTAGTTTTATTCTTAAAA
AGAAAATCTC

Query= MSMg01no449_n05.b1 MSMg01no449_n05.b1 CHROMAT_FILE:
MSMg01no449_n05.b1 PHD_FILE: MSMg01no449_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:33 2005
         (546 letters)



>mm_chr9_86475905_86476851
          Length = 947

 Score =  980 bits (507), Expect = 0.0
 Identities = 534/545 (97%), Gaps = 5/545 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcataaaga---taccatcacaagagaaaacataaatatccacagtcagtgaaaca 61
           |||||||||||||   ||  |||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattcataaagagaata--atcacaagagaaaacataaatatccacagtaagtgaaaca 262

                                                                       
Query: 62  aaaccgtctggtgtgaaatttaccctaatttatcctaatagactcccatgagtttgttat 121
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaaccgtctggtgtgaaatttatcctaatttatcctaatagactcccatgagtttgttat 322

                                                                       
Query: 122 taaactaaaatcaccttattctaagcacactgtgaatcatcataaaagattctgaccctt 181
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 323 taaactaaaatcaccttattctaagcacactatgaatcatcataaaagattctgaccctt 382

                                                                       
Query: 182 aaagatcatgaaaacttcaagattttactaataaagttaaaaatcctagctgttgcgtta 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaagatcatgaaaacttcaagattttactaataaagttaaaaatcctagctgttgcgtta 442

                                                                       
Query: 242 ctggttgactttggtctgtattttctggacttctgctttccacggataacaatcaggtag 301
           ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 443 ctggttgactttggtctgtattttctggacttctgcaggccacggataacaatcaggtag 502

                                                                       
Query: 302 gatctggtcataattagtgctgtacatctgggaggagacaaattcttctttgttttgggg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gatctggtcataattagtgctgtacatctgggaggagacaaattcttctttgttttgggg 562

                                                                       
Query: 362 ttcaggataaacagtggccatcttttctttgtatgcatcttgcacaatctaaaaataagg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttcaggataaacagtggccatcttttctttgtatgcatcttgcacaatctaaaaataagg 622

                                                                       
Query: 422 aaggcaagtcattattgtcataatgagaaggtgatattgaacacaaatcaaatttttatc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaggcaagtcattattgtcataatgagaaggtgatattgaacacaaatcaaatttttatc 682

                                                                       
Query: 482 cagttccaaagttaatttataatttgtactagagaaaaagccacacacatgagcaaagaa 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cagttccaaagttaatttataatttgtactagagaaaaagccacacacatgagcaaagaa 742

                
Query: 542 aatga 546
           |||||
Sbjct: 743 aatga 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space:   502232
Effective search space used:   502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)