MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-449O23
Chromosome	9 (Build37)
Map Location	118,322,956 - 118,323,419
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
Downstream gene	Eomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC665840 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665840
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	LOC100039650 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039650
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	LOC100039681 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039681
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Azi2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27215 MGI:1351332
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	2010110K16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67899 MGI:1915149
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eomes (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13813 MGI:1201683
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Golga4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54214 MGI:1859646
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Itga9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104099 MGI:104756
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039768 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039768
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Ctdspl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69274 MGI:1916524
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vill (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22351 MGI:1201781
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Plcd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18799 MGI:97614
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dlec1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320256 MGI:2443671
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 2 Proteins

name	Acaa1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235674 MGI:3605455
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG546165 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546165 MGI:3648969
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 410 ESTs, 25 Proteins pseudo : _no_value

name	Slc22a14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382113 MGI:2685974
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc22a13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102570 MGI:2143107
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9330176C04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109280 MGI:1924762
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Oxsr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108737 MGI:1917378
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myd88 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17874 MGI:108005
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acaa1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:113868 MGI:2148491
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Xylb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102448 MGI:2142985
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acvr2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11481 MGI:87912
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665840 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260340 GeneID:665840
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to glutamine repeat protein-1 transcript_id : XM_001487782.1

name	LOC100039650 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260342 GeneID:100039650
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to Glycine Rich Secreted Protein family member (grsp-2) transcript_id : XM_001473265.1

name	LOC100039681 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260344 GeneID:100039681
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to Zinc finger, CW type with PWWP domain 2 transcript_id : XM_001473321.1

name	Azi2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326519 GeneID:27215 MGI:1351332
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5-azacytidine induced gene 2 transcript_id : NM_013727.3

name	Azi2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326523 GeneID:27215 MGI:1351332
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5-azacytidine induced gene 2 transcript_id : NM_001048146.1

name	2010110K16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27754059 GeneID:67899 MGI:1915149
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2010110K16 gene transcript_id : NM_026442.2

name	Eomes (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83921571 GeneID:13813 MGI:1201683
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : eomesodermin homolog (Xenopus laevis) transcript_id : NM_010136.2

name	Golga4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130754 GeneID:54214 MGI:1859646
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : golgi autoantigen, golgin subfamily a, 4 transcript_id : NM_018748.3

name	Itga9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19526903 GeneID:104099 MGI:104756
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : integrin alpha 9 transcript_id : NM_133721.1

name	LOC100039768 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260346 GeneID:100039768
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100039768 transcript_id : XM_001473463.1

name	Ctdspl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801847 GeneID:69274 MGI:1916524
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like transcript_id : NM_133710.2

name	Vill (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956063 GeneID:22351 MGI:1201781
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : villin-like transcript_id : NM_011700.1

name	Plcd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130605 GeneID:18799 MGI:97614
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phospholipase C, delta 1 transcript_id : NM_019676.2

name	Dlec1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386588 GeneID:320256 MGI:2443671
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 2 Proteins product : deleted in lung and esophageal cancer 1, transcript variant 1 transcript_id : XM_486268.3

name	Acaa1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130202 GeneID:235674 MGI:3605455
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acetyl-Coenzyme A acyltransferase 1B transcript_id : NM_146230.3

name	Slc22a14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142379445 GeneID:382113 MGI:2685974
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 22 (organic cation transporter), member 14 transcript_id : NM_001037749.2

name	Slc22a13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381622 GeneID:102570 MGI:2143107
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 22 (organic cation transporter), member 13 transcript_id : NM_133980.2

name	9330176C04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46810286 GeneID:109280 MGI:1924762
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9330176C04 gene transcript_id : NM_175420.1

name	Oxsr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110626164 GeneID:108737 MGI:1917378
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : oxidative-stress responsive 1 transcript_id : NM_133985.1

name	Myd88 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31543276 GeneID:17874 MGI:108005
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myeloid differentiation primary response gene 88 transcript_id : NM_010851.2

name	Acaa1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131053 GeneID:113868 MGI:2148491
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acetyl-Coenzyme A acyltransferase 1A transcript_id : NM_130864.3

name	Xylb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131121 GeneID:102448 MGI:2142985
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : xylulokinase homolog (H. influenzae) transcript_id : NM_001033209.2

name	Acvr2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131001 GeneID:11481 MGI:87912
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : activin receptor IIB transcript_id : NM_007397.2

name	LOC665840 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260341 GeneID:665840
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001487832.1

name	LOC100039650 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260343 GeneID:100039650
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473315.1

name	LOC100039681 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260345 GeneID:100039681
definition	codon_start : 1 product : similar to Zinc finger, CW type with PWWP domain 2 protein_id : XP_001473371.1

name	Azi2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7304913 GeneID:27215 MGI:1351332
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_process : GO:0007249 - I-kappaB kinase/NF-kappaB cascade [Evidence IDA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : 5-azacytidine induced 2 isoform a protein_id : NP_038755.1

name	Azi2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114326524 GeneID:27215 MGI:1351332
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_process : GO:0007249 - I-kappaB kinase/NF-kappaB cascade [Evidence IDA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : 5-azacytidine induced 2 isoform b protein_id : NP_001041611.1

name	2010110K16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21735441 GeneID:67899 MGI:1915149
definition	codon_start : 1 product : hypothetical protein LOC67899 protein_id : NP_080718.1

name	Eomes (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83921572 CCDS:CCDS23603.1 GeneID:13813 MGI:1201683
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0001824 - blastocyst development [Evidence IMP]; GO:0030154 - cell differentiation [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : eomesodermin homolog protein_id : NP_034266.2

name	Golga4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20127150 GeneID:54214 MGI:1859646
definition	GO_component : GO:0005794 - Golgi apparatus [Evidence IDA] codon_start : 1 note : golgin-245 product : golgi autoantigen, golgin subfamily a, 4 protein_id : NP_061218.2

name	Itga9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526904 CCDS:CCDS23604.1 GeneID:104099 MGI:104756
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007229 - integrin-mediated signaling pathway [Evidence IEA] codon_start : 1 exception : mismatches in translation product : integrin alpha 9 protein_id : NP_598482.1

name	LOC100039768 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260347 GeneID:100039768
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473513.1

name	Ctdspl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38016121 CCDS:CCDS23605.1 GeneID:69274 MGI:1916524
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016791 - phosphoric monoester hydrolase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like protein_id : NP_598471.2

name	Vill (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956064 CCDS:CCDS23606.1 GeneID:22351 MGI:1201781
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] GO_process : GO:0051016 - barbed-end actin filament capping [Evidence IEA] codon_start : 1 exception : mismatches in translation note : villin-like protein product : villin-like protein_id : NP_035830.1

name	Plcd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790167 CCDS:CCDS23607.1 GeneID:18799 MGI:97614
definition	GO_component : GO:0005829 - cytosol [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0001525 - angiogenesis [Evidence IGI]; GO:0001890 - placenta development [Evidence IGI] codon_start : 1 note : phospholipase C delta-1; PLC-delta 1 product : phospholipase C, delta 1 protein_id : NP_062650.1

name	Dlec1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386589 GeneID:320256 MGI:2443671
definition	codon_start : 1 product : deleted in lung and esophageal cancer 1 isoform 1 protein_id : XP_486268.2

name	Acaa1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122797 CCDS:CCDS23608.1 GeneID:235674 MGI:3605455
definition	EC_number : 2.3.1.16 GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : thiolase B product : 3-ketoacyl-CoA thiolase B protein_id : NP_666342.1

name	Slc22a14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83627689 CCDS:CCDS23609.1 GeneID:382113 MGI:2685974
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : organic cation transporter like 4 product : solute carrier family 22 (organic cation transporter), member 14 protein_id : NP_001032838.1

name	Slc22a13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527200 GeneID:102570 MGI:2143107
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : organic cation transporter-like 3 product : solute carrier family 22 (organic cation transporter), member 13 protein_id : NP_598741.1

name	9330176C04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46810287 GeneID:109280 MGI:1924762
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : hypothetical protein LOC109280 protein_id : NP_780629.1

name	Oxsr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626165 GeneID:108737 MGI:1917378
definition	GO_function : GO:0005524 - ATP binding [Evidence ISS]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence ISS] [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004674 - protein serine/threonine kinase activity [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence ISS]; GO:0007243 - protein kinase cascade [Evidence ISS]; GO:0006979 - response to oxidative stress [Evidence IDA] codon_start : 1 product : oxidative-stress responsive 1 protein_id : NP_598746.1

name	Myd88 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754772 CCDS:CCDS23612.1 GeneID:17874 MGI:108005
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI] [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IMP]; GO:0007249 - I-kappaB kinase/NF-kappaB cascade [Evidence TAS]; GO:0006955 - immune response [Evidence TAS]; GO:0016064 - immunoglobulin mediated immune response [Evidence IMP]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0045351 - interferon type I biosynthesis [Evidence IMP]; GO:0042535 - positive regulation of tumor necrosis factor-alpha biosynthesis [Evidence IMP]; GO:0009615 - response to virus [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA]; GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway [Evidence TAS] codon_start : 1 product : myeloid differentiation primary response gene 88 protein_id : NP_034981.1

name	Acaa1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18700004 CCDS:CCDS23613.1 GeneID:113868 MGI:2148491
definition	EC_number : 2.3.1.16 GO_component : GO:0005777 - peroxisome [Evidence TAS] GO_function : GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence TAS] GO_process : GO:0006631 - fatty acid metabolism [Evidence TAS]; GO:0006629 - lipid metabolism [Evidence IEA] codon_start : 1 note : 3-ketoacyl-CoA thiolase A; peroxisomal 3-oxoacyl-Coenzyme A thiolase; peroxisomal 3-ketoacyl-CoA thiolase product : acetyl-Coenzyme A acyltransferase 1 protein_id : NP_570934.1

name	Xylb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794607 CCDS:CCDS23614.1 GeneID:102448 MGI:2142985
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004856 - xylulokinase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0042732 - D-xylose metabolism [Evidence IEA] codon_start : 1 product : xylulokinase homolog (H. influenzae) protein_id : NP_001028381.1

name	Acvr2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680634 CCDS:CCDS23615.1 GeneID:11481 MGI:87912
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0048185 - activin binding [Evidence IPI] [Evidence IDA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0019838 - growth factor binding [Evidence IPI] [Evidence IMP]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IDA]; GO:0004712 - protein threonine/tyrosine kinase activity [Evidence IDA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004702 - receptor signaling protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0050431 - transforming growth factor beta binding [Evidence IDA]; GO:0005024 - transforming growth factor beta receptor activity [Evidence IEA]; GO:0004675 - transmembrane receptor protein serine/threonine kinase activity [Evidence IEA] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IGI] [Evidence IMP]; GO:0007368 - determination of left/right symmetry [Evidence IMP]; GO:0048617 - embryonic foregut morphogenesis [Evidence IMP]; GO:0048276 - gastrulation (sensu Vertebrata) [Evidence IGI]; GO:0007507 - heart development [Evidence IMP]; GO:0007498 - mesoderm development [Evidence IGI]; GO:0042475 - odontogenesis (sensu Vertebrata) [Evidence IMP] [Evidence IGI]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway [Evidence IEA] codon_start : 1 product : activin receptor IIB protein_id : NP_031423.1

name	EG546165 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149260348 GeneID:546165 MGI:3648969
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 410 ESTs, 25 Proteins product : predicted gene, EG546165 pseudo : _no_value transcript_id : XR_031269.1

clone name	MSMg01-531N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-183A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-203J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-196F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185I12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-341K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507O01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-352K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380D07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-489M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480P14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-299O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212J16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227F24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-211I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147J09
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-449O23.T7 (MSMg01no449_o23.b1)	MSMg01-449O23.TJ (MSMg01no449_o23.g1)
ACC	AG537786	AG537787
length	762	821
length of high quality (start - end)	464 (58 - 521)	179 (82 - 260)
definition	CHROMAT_FILE: MSMg01no449_o23.b1 PHD_FILE: MSMg01no449_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:41 2005	CHROMAT_FILE: MSMg01no449_o23.g1 PHD_FILE: MSMg01no449_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:41 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TTTTCNTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCNAA ATCCGCGGAATTCCTTATAGTCTCCCCTGGCCTCAAACTGGCTGAGTAGT TGAAGATGATCTTGAACTCCTGATCCCCCTGTTTCCATCTTCTGAGTGCT GGGATCATAGGCTTGGACCTCTGTTCCTTGTTCTTAGTTGAATGACTGTG CTATGTGCAGTCTCTGATGAGAGAGGGCTGAGCCCCACTGTCTGCAGTGG TTCCATCCATCTGTATGTTTGCGGTGCCTCCCTTCTTCTCCTTTCTTCCA GTCCCTGGTACTCCCTAACATAGCTATGTACACCCTATTATAACAGGAGT ATATGTAGAGGACTCCAAACCACAGCCATCATCTGCAGTGCATACAGAAT GTTGCTCATAAAGCCTGAGGTAAAGCCCTTATGCCATGGCACAGCCCTCA CAGAATCCTTGCTTGGCTACCACGCTCGAGGGTGCCCGGAACATATTTAC ACAGTATTAATCTCTGAGGAAGAGTTTTCCTTTTTTCTTTATTCTCTAAG AATATCCCACATGCGCATTAAATATTCTATCAAATTTATTTCCATCTTTC CCCCCCAACGGCTTAAAATTTTCCATGGGCTCCTCCCAATCTCCAAACCC TGTTGCCAGGGAAATAAAACACAGGTTGCCCCCTAATGAGAAGTGGGGAG GCCCCCCCAATGGTGGGCCTATCTACCAGGTTCACCCCCCCAAAAGAGGG GATTCCCTCCCG	CGACTTCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXTTCAGGAATTCCAAAATACTGCAGACC TGCAAAGACATTCAGCCTTGCAGAGTGAACAGCAACTGGATTCTTGTTTT CCATCAGTAGACAGTCAGTATTGGAATAGCTGGACCACAGCATGTAAGCC ACTCTAATAAATTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGNNNNNNNNTTTTTTTTTNNNNNTNNNTTNTTTTTTTTTTTTTTT TTTTTTTTNNNNNNNNNNNNNNNTNNNNNNTTTTTTTTTTTTTTNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTNNTNTTNNNNTTTTTTTTT TTTTTTTTTTTTTTNTNTTNTTTTTTTTTTTTTTNTTTNNNNNTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTT TTTTTTTTTTTTTNTTTTTTTTTTNTTATTTNTTTTTTTTTTTTTTTTTT TNTTTTTTTTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTNNTTTTTTTTTTTTTTTTNTTTTTTTNTTTTTTNTTTTTT TTTTTTTTNTNNNNTTTTNNTTTTTTTTTTNTTNTTTNNNNTTTTTTTTT CCTTNTTTTCTTNTTTTTTNTTNATCTTTTCTTTATTTTTTNTNNNTTTA TCTTCCNTTTTATATTCTTCT
quality values	Open. Hide. 7 7 6 7 3 0 3 6 6 7 7 13 8 10 10 10 10 19 21 25 14 19 11 11 16 17 15 9 8 8 19 19 23 28 24 28 28 25 23 23 16 9 9 9 17 7 3 0 3 7 7 12 12 22 20 26 19 26 23 28 28 31 31 59 50 47 47 44 27 27 9 7 7 8 8 10 12 25 24 30 30 31 32 32 37 43 48 59 57 57 57 59 53 53 53 53 53 57 53 53 53 53 59 47 47 42 47 47 47 51 51 51 68 68 68 68 68 68 68 68 51 51 51 51 51 54 59 59 59 59 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 42 42 38 42 42 48 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 53 53 50 48 47 32 28 15 12 15 13 10 10 10 11 25 27 47 47 59 50 50 53 53 57 57 59 57 57 57 57 57 57 59 59 53 53 50 50 50 53 57 68 68 68 68 68 59 59 59 59 59 57 59 59 59 59 68 59 59 57 48 48 59 59 57 59 59 59 59 59 59 59 59 43 43 43 43 43 43 43 48 47 41 41 41 41 39 39 37 37 39 39 32 32 32 39 47 41 37 32 29 29 37 43 44 47 47 41 41 41 39 39 35 34 41 41 59 41 41 37 36 43 41 41 41 43 41 37 31 31 35 39 39 41 46 41 41 39 37 29 27 32 30 35 31 31 35 36 37 39 47 32 32 31 24 24 31 37 31 24 24 24 30 28 34 34 39 39 35 39 37 59 28 24 14 15 15 23 20 28 28 30 25 31 28 37 31 32 31 26 24 18 18 17 21 12 12 12 12 12 13 21 23 27 18 18 18 27 27 21 21 14 14 15 23 21 17 17 11 12 12 14 14 11 11 11 11 11 11 10 8 8 8 8 8 8 11 11 10 10 10 9 8 8 8 8 8 11 11 11 13 11 10 10 15 11 8 8 10 11 13 13 22 19 13 17 11 11 9 12 10 10 9 10 10 12 19 17 15 15 13 13 13 23 16 12 13 10 8 12 10 12 12 12 12 12 10 10 11 10 10 8 8 8 9 9 9 10 10 10 10 12 10 11 11 11 11 11 11 11 11 10 8 8 6 6 6 6 9 8 9 9 9 9 10 11 11 10 9 9 10 11 8 8 6 6 6 6 8 8 8 8 8 9 9 21 6 6 6 6 6 6 9 9 6 6 6 6 6 6 10 11 8 8 8 13 17 24 10 10 8 8 10 8 8 6 6 6 6 6 6 9 9 10 10 10 8 8 8 8 8 8 11 10 8 8 8 8 8 10 13 12 23 18 18 12 11 8 6 6 6 6 6 10 10 8 8 8 8 8 8 8 10 9 9 9 9	Open. Hide. 6 6 6 6 6 7 6 6 6 6 6 8 12 10 10 10 10 11 17 23 39 39 35 31 28 39 39 39 33 28 28 28 30 26 31 39 39 37 23 23 9 9 7 8 8 7 7 7 8 8 8 8 10 10 13 23 22 33 33 33 33 47 44 59 50 50 42 25 25 8 8 6 6 8 8 9 9 9 11 11 19 19 24 26 26 34 37 37 43 48 53 53 53 53 53 53 53 50 57 57 53 53 50 50 50 57 50 50 47 47 51 47 43 43 43 51 57 68 68 68 68 68 68 68 68 44 44 36 28 37 37 37 37 37 37 37 57 42 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 68 68 57 57 57 57 57 57 57 57 57 57 54 54 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 47 43 43 36 36 27 27 3 0 0 0 0 0 0 0 0 3 16 17 24 20 11 9 9 3 0 0 0 0 0 3 0 0 0 3 3 0 3 13 10 10 10 10 10 9 9 9 9 9 9 9 9 10 10 10 10 9 9 9 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 3 9 12 7 9 9 9 15 9 17 16 11 11 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 21 21 33 21 23 3 0 0 3 0 3 3 0 0 0 0 3 11 9 10 10 11 11 6 6 6 6 6 6 6 6 9 9 9 13 10 6 6 3 0 3 0 3 3 0 3 6 7 6 6 8 9 12 12 10 10 10 12 3 0 3 9 3 0 0 0 0 0 3 8 8 15 19 13 10 9 13 17 14 9 9 11 11 11 13 8 6 6 6 6 6 11 9 9 7 8 6 7 7 7 7 6 6 8 12 11 11 9 7 7 7 9 10 10 12 11 11 10 15 9 9 9 12 13 12 9 9 9 9 9 7 7 7 7 7 8 9 8 6 6 6 7 6 6 9 9 6 6 6 6 6 7 6 9 10 9 8 11 3 0 3 9 9 9 9 9 11 11 11 11 12 12 12 12 12 14 16 14 8 8 8 8 8 6 9 9 9 3 0 3 6 8 6 6 6 6 6 6 3 0 3 9 10 10 8 3 0 3 8 8 9 12 14 12 10 8 8 8 8 9 9 9 12 16 15 3 0 3 8 6 6 10 10 10 9 6 6 6 7 6 7 7 7 7 7 7 3 0 3 0 3 9 9 9 9 9 9 9 10 10 9 9 9 10 11 10 10 6 6 6 7 6 7 6 7 8 9 9 9 9 9 9 9 9 3 0 0 3 6 6 8 6 6 9 12 15 16 16 10 6 6 6 3 0 3 8 11 8 9 9 3 0 3 10 7 7 6 3 0 3 9 10 13 11 11 12 10 10 11 11 12 13 3 0 3 0 0 0 0 3 6 8 3 0 0 3 7 6 6 6 6 9 8 8 3 0 3 3 0 3 9 3 0 0 0 0 3 8 8 8 6 6 6 6 6 6 6 6 3 0 3 6 8 8 6 6 3 0 3 6 7 6 8 3 0 3 3 0 3 10 10 10 15 8 6 6 8 8 10 11 11 10 8 10 10 3 0 3 0 0 0 3 8 6 6 6 6 6 6 6 3 0 3 10 11 11 11 9 9 6 6 6 6 8 8 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no449_o23.b1 MSMg01no449_o23.b1 CHROMAT_FILE:
MSMg01no449_o23.b1 PHD_FILE: MSMg01no449_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:41 2005
         (464 letters)



>mm_chr9_118322644_118323507
          Length = 864

 Score =  849 bits (439), Expect = 0.0
 Identities = 458/467 (98%), Gaps = 6/467 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattccttatagtctccc---ctggcctcaaactggctgagtagttgaagatgatcttg 57
           ||||||||||||||   ||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gaattccttatagt---ccaggctggcctcaaactggctgagtagttgaagatgatcttg 720

                                                                       
Query: 58  aactcctgatccccctgtttccatcttctgagtgctgggatcataggcttggacctctgt 117
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 719 aactcctgatccccctgtttccatcttctgagtgctgtgatcataggcttggacctctgt 660

                                                                       
Query: 118 tccttgttcttagttgaatgactgtgctatgtgcagtctctgatgagagagggctgagcc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tccttgttcttagttgaatgactgtgctatgtgcagtctctgatgagagagggctgagcc 600

                                                                       
Query: 178 ccactgtctgcagtggttccatccatctgtatgtttgcggtgcctcccttcttctccttt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ccactgtctgcagtggttccatccatctgtatgtttgcggtgcctcccttcttctccttt 540

                                                                       
Query: 238 cttccagtccctggtactccctaacatagctatgtacaccctattataacaggagtatat 297
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 539 cttccagtccctggtactccctaacatagctatgtacacccaagtataacaggagtatat 480

                                                                       
Query: 298 gtagaggactccaaaccacagccatcatctgcagtgcatacagaatgttgctcataaagc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtagaggactccaaaccacagccatcatctgcagtgcatacagaatgttgctcataaagc 420

                                                                       
Query: 358 ctgaggtaaagcccttatgccatggcacagccctcacagaatccttgcttggctaccacg 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ctgaggtaaagcccttatgccatggcacagccctcacagaatccttgcttggctaccacg 360

                                                          
Query: 418 ctcgagggtgcccggaacatatttacacagtattaatctctgaggaa 464
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctcgagggtgcccggaacatatttacacagtattaatctctgaggaa 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information