BAC Information

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BAC

Clone NameMSMg01-450C15
Chromosome9 (Build37)
Map Location 82,086,032 - 82,086,273
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039038, Htr1b, LOC671392, 4930486G11Rik
Downstream geneLOC100039085, Irak1bp1, Phip, LOC100039144, Hmgn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450C15.T7 (MSMg01no450_c15.b1)MSMg01-450C15.TJ (MSMg01no450_c15.g1)
ACCAG537959AG537960
length747798
length of high quality
(start - end)
188 (125 - 312)242 (72 - 313)
definitionCHROMAT_FILE: MSMg01no450_c15.b1 PHD_FILE: MSMg01no450_c15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:59 2005CHROMAT_FILE: MSMg01no450_c15.g1 PHD_FILE: MSMg01no450_c15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGTTCTATAATTTGCGGCCGGTAAACGAATACNATCAGCATCTGGTCCG
NGGAATTCACACTTACAAAAATCTGTCCTGNTTAGGCCCAGTCTTTCCTC
AGTATGACATTTTGGAATGATCCTCCTGTGATGTTGAAAGTATGTGATCT
GCTTTTTTCTTTATTTTGCTTTTACAGAGGATTAGAGCTAAGAGACCACA
TGAATCTCAGAAGAGACTTTGAACTGACACTGCTATAGACTATGAGGGTT
TTTGAAATGGGAGTAAATGTAATTTGCATTATGCTATAGCTAGGTATGAC
CCCATAGACTCACTTTCTGGATTTATTCTATGGGGACCAGAGAGTGGAAT
GTAGTAGTCTGAATACACTACGCCCATGGGACATGGGTCTATTGGGAGGT
GGTGCCTTATTGCACGATGTGTAGATTTTTCAGAGGAAGTCACAGGTGAC
TCTTGATGTCTTCTGTTGATCCAGCTCCTCATAATGCCTATTGAGACTCC
ATGGCTGCCAGCACAAGATAGCCCCCTTCTGCGTGTCTTCTGATCTTGAT
GTCTAGTTTTTGCTTCTCATGCCTCAATTTTGCCTGACGCTGCCCATGCC
TTCCCATTCATGATACCCTGGACTCGATATTTCTGAATCTGCAATCTTTT
TTCCCTTTTAAAGACCACGCCCCTATTACCTTCCTTTTATCCTGCACTAT
CAATCTCCTCTTCTCATAAAGTTTTAACCCTGCCTCTCTCTTTCCCN
GCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTGAGAACGCCCTCCCATAGGCTCATAT
GTTTGAATACTTGACCCCACGTTTGTGGATCTGTTTGGGAAGGATTAGGT
ATGTCCTGTTGAAGGAGTTGTCACCTGAAGTGGTCTTCAGGTGTCTCTCT
GTACAGTGCTTGCCCAGGATACCTACAATTAGCTAGACAAAGAGTCTGTT
ATTTTTGGTTCCAGTGATGACTGATTTAAACCTTTCAAGCTCTCAGCTAC
AACACCAGCACCATTTTTTCCTGTAGCCACGCTCCACAACAAGATCGTCT
TTGATTCTGGAATCATGAGCCCTGATATGAAATGCTTTTACTAGTTACCT
TCATCCCAGCACTCTGTCTTGTCTCTGTTTTCATAGCTTACATTCTCCTA
TCCTATCTATCACTATTCTCGTCTATCCACTATCCTCTAGGTGTCTGTCC
TTGTTTCCATTTTCCTCGATTTCTCTCTTTTCTATTATTTCCTTTCTTTC
CTTTTCCCTTGTTTTTCTTCGACTTTCTACTCTTATCTCCTTTTTATTGT
TTCATCCATTTTTTTTCCCCTTCTCCGTCCTTTTCCTCCTTCTTCGTCTT
CGTCTCCTCTTCCTTGCTCTTCTTTTTTCTTCTTTCTATTCCTTCCTCTC
CTCCTTTCTGCTTTCCTCTCTTTCATCCTTCTTTCCTTTTCCCTTATTTC
CCCTCTCTCTTCCTTCTTTTTTTCCCTTCTTATTCCCTTCCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_c15.g1 MSMg01no450_c15.g1 CHROMAT_FILE:
MSMg01no450_c15.g1 PHD_FILE: MSMg01no450_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:59 2005
         (242 letters)



>mm_chr9_82085708_82086349
          Length = 642

 Score =  422 bits (218), Expect = e-122
 Identities = 236/242 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgagaacgccctcccataggctcatatgtttgaatacttgaccccacgtttgtggatc 60
           ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 566 agtgagaacaccctcccataggctcatatgtttgaatacttgaccccaagtttgtggatc 507

                                                                       
Query: 61  tgtttgggaaggattaggtatgtcctgttgaaggagttgtcacctgaagtggtcttcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgtttgggaaggattaggtatgtcctgttgaaggagttgtcacctgaagtggtcttcagg 447

                                                                       
Query: 121 tgtctctctgtacagtgcttgcccaggatacctacaattagctagacaaagagtctgtta 180
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |
Sbjct: 446 tgtctctctgtacagtgcttgcccaggatacctacaattagctggacaaagagtctggaa 387

                                                                       
Query: 181 tttttggttccagtgatgactgatttaaacctttcaagctctcagctacaacaccagcac 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gttttggttccagtgatgactgatttaaacctttcaagctctcagctacaacaccagcac 327

             
Query: 241 ca 242
           ||
Sbjct: 326 ca 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)