BAC Information

Click to search

BAC

Clone NameMSMg01-450E08
Chromosome9 (Build37)
Map Location 95,986,746 - 95,987,193
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc9a9, Chst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1
Downstream geneGk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450E08.T7 (MSMg01no450_e08.b1)MSMg01-450E08.TJ (MSMg01no450_e08.g1)
ACCAG538041AG538042
length753757
length of high quality
(start - end)
320 (329 - 648)440 (77 - 516)
definitionCHROMAT_FILE: MSMg01no450_e08.b1 PHD_FILE: MSMg01no450_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:08 2005CHROMAT_FILE: MSMg01no450_e08.g1 PHD_FILE: MSMg01no450_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGACCGGAGCCGC
GGAATTCAGCCAGTGCTAAAAAAGAGCAGCCCATGTTCTGAACTACTAAA
ACAATCTTTCTAACACCGGTCCTCAAACCAAGAAAAAGTAAGGAAGGCTA
AGTAAATCTTGAGATAGCAAATTCACTTTAACAGAATAAAGAAAGCAAAC
AAAATCAATCCCTGACCATTCAAAGGACAGTAGAAAGGACACTAAAAACA
TTGTTAATTGGGATATCAACTTAAATACGTTGGGAAACATGCTTTGTGAT
TTCTTAAAAAGTTAAACATTTATTGATTGTATGACCCAGCAATTCCACTT
GTAGGTATTTATTTACCTTTGGAAAATGAAAACGTGTGTCAACACATAAA
CGTTTATTTGAAGCTCACAGCAGTCTCACTCATAACAACCACAGTTGGAA
ATACGACCACTGTTCAACTCGTGAGTGGATAAGCAAGTTGGGCACACTGT
CAAACTGAAAGATACTAGCACAAAACTTTCTGAAGTTCAGCAATGGCAGA
ACCTCCCTGGAATCCCAGCACTGGATCAGGAGTTCAAGGCCATCCTCAGT
TACAAAGTCCAGACTATACTATAAGAGGCCCTGTCTTGAAAGAAAAGAAN
AGGACTATAGACAGGCTCTAACCTTTAATTTCAGTACTCAGAAGGCAGAG
GCTGGTGTATTTCTATAATTCCTGGGGAGGGGCAGCCAGTCTGTCACTTT
ATG
ACGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAAAAATAGATGACTAGATAG
ATAAAAATGCAAGCAGGTCTGGAAATATCCATATATGTGAGTGACAGGAC
CCAGAAGAAGCTCTGCTCAGGAGGCCATGTCATATAGCTAGAGCATAGAC
GGCTTTCAACACCCAGCCACACTTAAAGGCCTCAGCTTCCTTCCTTTTTC
CTTCCTTCCTCCTTCTTTCTCATACTTCCTACCTTCCTTCCTTCCTTCTC
TGATTCCTTCCTTTCTTCATTTCTTTTCTTCTCAAAGGTTTCCTGAGTAA
GTGGCTGCTTCCAGAACTTGGGTAGGGGATGAAGGTGCTTCCAGATTAGG
AAATGCACATAGAATCACAGTGTCATAGAAAAAACAAAAGAGTGGAAGAG
GCTCTTGCATCAGGACACAGGTAGCTGGCAGCTGTGGTCCTTGGACTATC
ATAATCTGAGACAGATGAAAATTGGGGAACTACAGATTAGTCAGCAGGCA
AGTCTGTGGGACATTTTCTGGATTACGGATTGATGTGAGAGAGTCTAGCT
GGTTGTGGATTAATACTTCTCGGGTAGTTCTGGCCAGGTACGCCCTGCCA
TGGTATGTATTTTTCTTTCTGCCCCCCCCCGAAGTTCTCTCCCTCCTTGC
CTCCTATTCCTCTGCCCCGGTTTCCCCCTCCCGATTGTACCGTTGACCCT
TTATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_e08.g1 MSMg01no450_e08.g1 CHROMAT_FILE:
MSMg01no450_e08.g1 PHD_FILE: MSMg01no450_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:08 2005
         (440 letters)



>mm_chr9_95986548_95987393
          Length = 846

 Score =  762 bits (394), Expect = 0.0
 Identities = 432/450 (96%), Gaps = 12/450 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttaaaaatagatgactagatagataaaaatgcaagcaggtctggaaatatccatatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttttaaaaatagatgactagatagataaaaatgcaagcaggtctggaaatatccatatat 258

                                                                       
Query: 61  gtgagtgacaggacccagaagaagctctgctcaggaggccatgtcatatagctagagcat 120
           ||||||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||
Sbjct: 259 gtgagtgacaggacctagaagaagctctgctcaggaggccatatc--atagctagagcat 316

                                                                       
Query: 121 agacggctttcaacacccagccacacttaaaggcctcagcttccttcctttttccttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agacggctttcaacacccagccacacttaaaggcctcagcttccttcctttttccttcct 376

                                                                       
Query: 181 tcctccttctttctcatacttccta----ccttccttccttccttctctgattccttcct 236
           |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||
Sbjct: 377 tcctccttctttctcatacttcctaccttccttccttccttccttctctgattccttcct 436

                                                                       
Query: 237 ttcttcatttcttttcttctcaaaggtttcctgagtaagtggctgcttccagaacttggg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttcttcatttcttttcttctcaaaggtttcctgagtaagtggctgcttccagaacttggg 496

                                                                       
Query: 297 taggggatgaaggtgcttccagattaggaaatgcacatagaatcacagtgtcatagaaaa 356
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 497 taggggatgaaggtgcttccagattaggaaatgcacatagaatcagagtgtcatagaaaa 556

                                                                       
Query: 357 aacaaaagagtggaagaggctcttgcat---ca---ggacacaggtagctggcagctgtg 410
           |||||||| |||||||||||||||||||   ||   ||||||||| ||||||||||||||
Sbjct: 557 aacaaaagggtggaagaggctcttgcattaccattaggacacaggcagctggcagctgtg 616

                                         
Query: 411 gtccttggactatcataatctgagacagat 440
           ||||| ||||||||||||||||||||||||
Sbjct: 617 gtcctcggactatcataatctgagacagat 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 846
Length adjustment: 9
Effective length of query: 431
Effective length of database: 837
Effective search space:   360747
Effective search space used:   360747
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)