BAC Information

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BAC

Clone NameMSMg01-450L12
Chromosome9 (Build37)
Map Location 59,702,753 - 59,703,054
singlet/doubletsinglet
Overlap geneMyo9a
Upstream geneHcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, EG665385, LOC100040361
Downstream geneNr2e3, EG665389, Thsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450L12.T7 (MSMg01no450_l12.b1)MSMg01-450L12.TJ (MSMg01no450_l12.g1)
ACCAG538381AG538382
length751738
length of high quality
(start - end)
192 (326 - 517)302 (330 - 631)
definitionCHROMAT_FILE: MSMg01no450_l12.b1 PHD_FILE: MSMg01no450_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:44 2005CHROMAT_FILE: MSMg01no450_l12.g1 PHD_FILE: MSMg01no450_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTCTATAATTTGCGGGCGGTAAACGAATCACTTTTCAAATAGGATCCG
NGGAATTCCTCATTTCACAATACCTAGCTAATTGAGTAATCTGATAGAGA
TAGACACTATCATTTGTTACCGGTTGAGAATAGGGGTTCCCTACATTCCC
AAGGGATCTTGAATGGCCAGATATTCCTCTTACCACACCTGATCACCACC
CAGATTTCTTTTTCTTTCTTTTTTTTAAAAATTTATTTATTTATATGAGT
ACACTGTACTTCAGACATACCAGAAGAGGACATTGGTATCGGATCCCATT
ACAGATGGTTGTGAGTTCTCCATGTGGTTGCTGGGAATTGAACTCAGGAC
CTCTGGAAGAGCAATCAGTGCTCTTAACTGCTGAGCTATCTCTCCAGCCC
CCAGATTTCTTTTTCTTTCTTTTTTTTTTAAAGATTGATTTATTATTATA
TCTAAGTACACTGTAGCTGTCTGCAGATGCACCAGAAGAGGGTGTCAGAT
TTCTTTATGGATAGCTGTGAGCCACCATGTGGTTGCCGGGACCTGAACTC
AGGACCTTCTGAAGAGCAGTCAGTGCTCCCAACCACTGAGCTATCTCTTT
AGCCCTATCACCCATAATACCCTACAATTTCTTATATTACCACAATTTCT
GTATTTCCTTTCAACATTACTCTGCCAGGATTCTCCCCGTCCACCTGTCC
CAGTGCTTACGCCTACACATTGTTGTCTTTCCACCTCTGCTCATCCCTGT
G
CCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXTTCAGACTGGGGGTGAA
CTATAGAAGGTTCCCAACAATTCCTGAGCTCTTTCCAGGAGTTTGCTGCT
TGCTGAATGAGCGAATATCCCATCTTTATCAAGCAAGGAAGTATTGCTAG
TTGGTAGTCTGCTTTGGCGAATGCCAGTTCTGACATTCCAGGCAATATCA
AATGTGTCACTGAAAAAAATTAGTATAATTTGCTTAAGTTAGTATATTAT
TGATATGGAACATTAAAAGATGCTAACAAGCATAAAATAGTTTTATTACA
ATGACTACCAATCAAGTGTTTACTTCTCCTGTCACTCAGAAAAAAGTTTT
AGTGGATTCAGACACATTCGTATACAAATGTATAGGTAAATGAATACATC
ATATAGATGATATCGCTAACATACTGTTATATGTAATCTGTGTGCTTTAG
TATATAATAGACTCTATGGCTTTCTTTTTTTCCAGAAGTTTCAAAAACTC
CCATTGGGATCTATAATACTAATAGGATACATGAATCTACGGAATATCCA
TTTCTTTTTGAAACATCTTATTCATAAACACACATGCTCCTGATACATCA
ATCAAACATATTGAGCTGTCACTACAGACTTAGTGCTATTATCAGCACTA
CAGGTAGATGATGAACAAATTACCAGTACTTATAGCATAAGATTTAATGA
AAGGCTTTCCAGGTAAAGATTAGTACATTTAAATCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_l12.g1 MSMg01no450_l12.g1 CHROMAT_FILE:
MSMg01no450_l12.g1 PHD_FILE: MSMg01no450_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:44 2005
         (302 letters)



>mm_chr9_59702553_59703254
          Length = 702

 Score =  561 bits (290), Expect = e-164
 Identities = 299/302 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcactcagaaaaaagttttagtggattcagacacattcgtatacaaatgtataggtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgtcactcagaaaaaagttttagtggattcagacacattcgtatacaaatgtataggtaa 443

                                                                       
Query: 61  atgaatacatcatatagatgatatcgctaacatactgttatatgtaatctgtgtgcttta 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 442 atgaatacatcatatagatgatatcgttaacatactgttatatgtaatctgtgtgcttta 383

                                                                       
Query: 121 gtatataatagactctatggctttctttttttccagaagtttcaaaaactcccattggga 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 gtatataatagactctatggctttctttttttccagaactttcaaaaactcccattggga 323

                                                                       
Query: 181 tctataatactaataggatacatgaatctacggaatatccatttctttttgaaacatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tctataatactaataggatacatgaatctacggaatatccatttctttttgaaacatctt 263

                                                                       
Query: 241 attcataaacacacatgctcctgatacatcaatcaaacatattgagctgtcactacagac 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 262 attcataaacacacatgctcctgatacatcaatcaaacatattgagctgttactacagac 203

             
Query: 301 tt 302
           ||
Sbjct: 202 tt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)