BAC Information

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BAC

Clone NameMSMg01-451B08
Chromosome9 (Build37)
Map Location 119,907,183 - 119,907,538
singlet/doubletsinglet
Overlap genenone
Upstream geneCtdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1
Downstream geneCmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451B08.T7 (MSMg01no451_b08.b1)MSMg01-451B08.TJ (MSMg01no451_b08.g1)
ACCAG538657AG538658
length7461,288
length of high quality
(start - end)		627 (53 - 679)---
definitionCHROMAT_FILE: MSMg01no451_b08.b1 PHD_FILE: MSMg01no451_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:12 2005CHROMAT_FILE: MSMg01no451_b08.g1 PHD_FILE: MSMg01no451_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGGACAGCCAGGGCTACACAGAGAAACTCTGTCTCAG
AAAAAAAACAAAAATCACCAATCAATCAATCAATCAGTCAACCAATCAAA
GAAAAGCTATCTTCATATCTTAGTATCTTAATTTTTTATATCTATTTAGT
GTGTATGTGTGTGTGTCTGTGTGTGTGTGTATGTGTGTGTGTCTGTGTGT
GTGTGTATGTGTGTGTGTCTGTGTGTGTGTGTGTGTCTGTGTGTGTCTGT
GTGTCTGTGTCTGTGTGTGTGTGTCTGTGTGTGTGTCTGTGTGTGTGTCT
GTGTGTGTGTGTGTCTGTGTGTGTATGTGTGTCTGTGTGTGTGTGTGTAT
GTGTGCATGTGAATGCAAAAGTCAAAGAACTGGTTCTGTCCTTTACCTTG
TGGATTACAGGGTTCAAACTCAGTCTTCAGGCTTGGCTCCGAGTTCCTTT
CCCTGGTGATCCATCTTCCTGCTCTGACATCTCACTATCTCCTAAGTGTT
TTATACGTCCTTTCAGTTTGTATGGGTTGTTGTTGTTGTGTTATATGTCT
AATATATATGAGGCTAGCCTTTAAGTCACTATATAGTCTATATAGCAGAG
GCTAGCCTTGGACTTCTGAACTGCTTACTTCTGCTTTTCTCAAGTGCTAG
GGATATAGGCCTTTGCCACAATGTTTGGGGTGCTTCTAGGCGTTCA

TTCCTGTGTCTTGGTGGTTCCGTTTTTGTCGCTCGCGGTGCGGGGTCCTG
TTTCTCTCGCTGCTGGAGGGGGGTATAGATTCTCTAGGCACACGGGTCTC
TCCGCGCTGGTTCCACTCCTTCGCGCGTCCGTGTTCTTACGNTGCCCTCT
CTCCGTCCTCGGTGGTCGTGCCGTGTGTGTTCCGCTCACGCCCCTCTCGT
CCGTCCTTCTCTTCCTTACTTTTGCGTCGCGCGGCCGGCCCCCCTTCGTC
CTCTTCTTTTTCGTGTGTTTGTTCTGCCGGTCGGTGCCGCCGCGTTGTTG
TCGGTTCGGCGGGCGTGCTGTCCCGCGTGCCGCCCGTCCTCCTGTCGTGT
GGTGGTCTTCGCGTTACTTCTCATCTGTTGCTACGCGGCCGGCGGGATCG
CGTTTGGCGGGCGCGCGTCTCCACATTGTCTCGTCTCTGGTGTCCTCGCG
AGCCTGCTGCGTGTCGTGGTCTGTTCGCGTGGGGGCGGCGGTGCTATGCG
CGTTTGTCGCCTCCCCTGTCCGTGCCTCCTTCCTCTCCGCCGCCGCCGTT
TATGCCGTCCTTTCACTCTGTATTCGCCGCGTGGTGGTCTCGTGGTTGGC
TGTTGCGCGGCGGGCGAACCGGCGACGCTTGCGCGCAGTTGCGTCGTCCC
TTGCCGAGCGGATTCGTTTGTCGATAGTTGTTTCGCGCGTTTGATGCCGC
GTGTCTCCCGGCGGCGCGACGTGTATATTGTTGGCGTCTATTCTCGCTGT
CGTGCGTGGTCTCGTGCGCGTGGTATCTCGTNTACTGTGCTCCGGCGCCT
TCCTCCGATTCTATGTTCTTGCTGTTCCCCCTGCGCGTGTGTCGTTCGCT
ACTCGCGCATATGCACCGGCGTTGTGCGCGTATTTGCCCGGTGTTCGCGC
ACCCGTTCTCCATTGCCTGGTTACACAACCTTTGGCCGCGCGCCCTCGTC
GCATGCGTGTCGCTGACTCCTCCCGCGTCGTGTCGCCACTGCTCTACACC
CGTCTATACTTCTTATTCGTGCACGCGGTTATGATAGCATCATATGGCGC
TTGCGCTCGCCTCGTGTTCGACAACTCGCTAGTGTCTCGGTGCGTTGCCC
GTGGTCCCGACGTTGATAGCAGCGGATGGTTTACCGTACGTCCTCCTGTG
ATATATGCATTCCGCGACATCTTGTCCGCGGGCCATCGCTATGGCCGCGA
TAGTGATGCGTGTCCNCACCGCGGTGATGCGCGTGTGTGTGTCGCGTGCG
ATAGCGGGGCGGGCGCGTGTCGCTGTGCTCTATACGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_b08.b1 MSMg01no451_b08.b1 CHROMAT_FILE:
MSMg01no451_b08.b1 PHD_FILE: MSMg01no451_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:12 2005
         (627 letters)



>mm_chr9_119906509_119907538
          Length = 1030

 Score =  619 bits (320), Expect = 0.0
 Identities = 350/366 (95%), Gaps = 13/366 (3%)
 Strand = Plus / Minus

                                                                        
Query: 265  gtgtgtgtctgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtat 324
            |||||||||||||||||||  ||| ||||||| ||||||||||||||||||||||    |
Sbjct: 1030 gtgtgtgtctgtgtgtgtg--tgtatgtgtgtgtgtgtgtgtgtgtgtctgtgtg----t 977

                                                                        
Query: 325  gtgtgtctgtgtgtgtgtgtgtatgtgtgcatgtgaatgcaaaagtcaaagaactggttc 384
            |||||||    |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 976  gtgtgtc----tgtgtgtgtgtatgtgtgcatgtgaatgcaaaagtcaaggaactggttc 921

                                                                        
Query: 385  tgtcctttaccttgtggattacagggttcaaactcagtcttcaggcttggctccgagttc 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920  tgtcctttaccttgtggattacagggttcaaactcagtcttcaggcttggctccgagttc 861

                                                                        
Query: 445  ctttccctggtgatccatcttcctgctctgacatctcactatctcctaagtgttttatac 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860  ctttccctggtgatccatcttcctgctctgacatctcactatctcctaagtgttttatac 801

                                                                        
Query: 505  gtcctttcagtttgtatgg---gttgttgttgttgtgttatatgtctaatatatatgagg 561
            |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 800  gtcctttcagtttgtatgggttgttgttgttgttgtgttatatgtctaatatatatgagg 741

                                                                        
Query: 562  ctagcctttaagtcactatatagtctatatagcagaggctagccttggacttctgaactg 621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740  ctagcctttaagtcactatatagtctatatagcagaggctagccttggacttctgaactg 681

                  
Query: 622  cttact 627
            ||||||
Sbjct: 680  cttact 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 101
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1030
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1020
Effective search space:   629340
Effective search space used:   629340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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