BAC Information

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BAC

Clone NameMSMg01-451G03
Chromosome9 (Build37)
Map Location 66,300,787 - 66,301,180
singlet/doubletsinglet
Overlap geneHerc1
Upstream geneSpg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2
Downstream geneFbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2, LOC100041390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451G03.T7 (MSMg01no451_g03.b1)MSMg01-451G03.TJ (MSMg01no451_g03.g1)
ACCAG538885AG538886
length766737
length of high quality
(start - end)
362 (52 - 413)393 (78 - 470)
definitionCHROMAT_FILE: MSMg01no451_g03.b1 PHD_FILE: MSMg01no451_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:36 2005CHROMAT_FILE: MSMg01no451_g03.g1 PHD_FILE: MSMg01no451_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGAGAGCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGCTTTTCCAATCCTTCTCAACAGTCTGTTTTACGGGA
ACACTTCATTACCACCGTTCCCCAGCTGAAGAGTTCTGAATTCACGCAGT
TGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTTCATTACCACCGTT
CCCCAGCTGAGGAGTTCTGAATCCACGCCGGATCCTTCTCAACAGTCTGT
TTTACGGGAACCTTTATGACCGTGACCCGCAGTTCTGGTTCTGGAATGAG
GGATCTTCCTTGCGCCGGTGATGGTAACCGTCCAGGGTTTTCTCATCCCA
GGATTTCTCGTCCCGGGTTTTCTCGTCTCGGGTTTCGGCACCTACTCTTA
CCCGCGTTCTCGCGACCGGCCAGGAAGAACGCAATAAACCGGAACCTTCT
GCGGCAAAACTTTATTGCTTTCATCTTCAGGAGCCAGAGAGCAAGAGAGC
TAGAACTTGATAGTCTGATAAAGAACTTGAACAAGATAGCTAGGGTGCAA
CGAGCAAGAGAGAGCATGAATGCCATTTCCTTGACCTATGTCCTTTTTTT
TGTGTCGCCTTAGGAGTTTTTTAGGTGGGGTTTTACTCCTCTCCCCCCTC
TCTTAGTTCTGTGATTTGTTGACTAATCTTGTTAGATCTTTCTCGATTTA
CACGCCCTTTTTTTTCTAGCTTTTATCCACCCACTTCGTTCCTTTCGTTT
TACTATCTTTCCTCCG
TTTCTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAAAATGGG
GGTGACACTATAGAATGTCCAAGAAATTCTCTAAAATCAGAACCTATAGA
ATCTAGAATAAGTACAATAATGAAAGGAGAGAGAGCGAGAAGGAGAAGGT
TTTTTAATTCCTTCAGAAAATGTGTTTAGAACCTTTTGTTTGTTTGTTTG
TTCGTTTGTTTGTTTGTTTTGAGGAAGGTTTTACTATGCAGTCTTGGCTG
GCCTTGCTACATAGCCCAGGGTATCTTTGTGTTTAAGAGAATCTTCTTGC
TTCAGCCCGCTGGGACTACAGGTGTACATAACCAAACTTACCTCTAGAAA
CTTAAAATTAAACTTTTCCATTTTTGACTGTTGCTTTTTAAAAAAGGCCA
ATCCTTACTATTTTCTTAACCTTTGTTATACAGAGATTGATCAACAAGCT
GAAGAAAGTGACCAAGCACAGCAGGCACAGACACCAGTGACCACCAGCCC
GTCAGCATCCAGCACAACTTCCTTTATGAGCAGCTCCCTCGAGGACACCT
CAACTGCCACCACTCCTGTCTCGGATCCTGAAACGGTGCCTGTTTCTGAG
TCTCCTGTAGTGATGCCCCTTATTCTTCTCTTGTAGACCAGTGAGCCTTT
GATGTCTATCAAACTGATGCCTGTGTTTCTTACAGCATTTTGTTTCTCTT
TACCACGGTGTGCCTAGTTAATATCCGTGTATTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_g03.g1 MSMg01no451_g03.g1 CHROMAT_FILE:
MSMg01no451_g03.g1 PHD_FILE: MSMg01no451_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:36 2005
         (393 letters)



>mm_chr9_66300588_66301380
          Length = 793

 Score =  739 bits (382), Expect = 0.0
 Identities = 391/394 (99%), Gaps = 1/394 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctaaaatcagaacctatagaatctagaataagtacaataatgaaaggagagagagcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tctctaaaatcagaacctatagaatctagaataagtacaataatgaaaggagagagagcg 259

                                                                       
Query: 61  agaaggagaaggttttttaattccttcagaaaatgtgtttagaacctttt-gtttgtttg 119
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 260 agaaggagaaggttttttaattccttcagaaaatgtgtttagaacctttttgtttgtttg 319

                                                                       
Query: 120 tttgttcgtttgtttgtttgttttgaggaaggttttactatgcagtcttggctggccttg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttgttcgtttgtttgtttgttttgaggaaggttttactatgcagtcttggctggccttg 379

                                                                       
Query: 180 ctacatagcccagggtatctttgtgtttaagagaatcttcttgcttcagcccgctgggac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctacatagcccagggtatctttgtgtttaagagaatcttcttgcttcagcccgctgggac 439

                                                                       
Query: 240 tacaggtgtacataaccaaacttacctctagaaacttaaaattaaacttttccatttttg 299
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tacaggtgtacataaccaaacctacctctagaaacttaaaattaaacttttccatttttg 499

                                                                       
Query: 300 actgttgctttttaaaaaaggccaatccttactattttcttaacctttgttatacagaga 359
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 actgttgcttttttaaaaaggccaatccttactattttcttaacctttgttatacagaga 559

                                             
Query: 360 ttgatcaacaagctgaagaaagtgaccaagcaca 393
           ||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgatcaacaagctgaagaaagtgaccaagcaca 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)