BAC Information

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BAC

Clone NameMSMg01-451K17
Chromosome9 (Build37)
Map Location 65,374,224 - 65,374,776
singlet/doubletsinglet
Overlap genenone
Upstream geneMegf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a
Downstream genePlekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451K17.T7 (MSMg01no451_k17.b1)MSMg01-451K17.TJ (MSMg01no451_k17.g1)
ACCAG539104AG539105
length753754
length of high quality
(start - end)		655 (48 - 702)593 (77 - 669)
definitionCHROMAT_FILE: MSMg01no451_k17.b1 PHD_FILE: MSMg01no451_k17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:00 2005CHROMAT_FILE: MSMg01no451_k17.g1 PHD_FILE: MSMg01no451_k17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCTGTGTTCGTTATAAAAAGAAATCAGGAAACTGGAGGATGT
TAACAGATTTAAGAATCACAAACAAGAAGATCCAGCCAATTAGCTGTTTA
CAGTCTGGAAACCTTTTGCCTTCTTTGTTACCTAAGATAAGATCCATGAT
AGTAGTTAATTTAAAAGATTCCTTTTCCACATTCCCTTTCCATGATATGA
TAGGGAAAGGTTTATTTTCTCAGTACCTACTTAAAATCATATTTGTCCAA
CAAAGAGATATCATTGGAAAGTCTTATCACAAGGAATTGTAAACATCCAT
ACATGTGTCAATATTTTATACAAGAGCCATTAGAAATAATTCATAAATAG
TTTCCTCAATCTAAAATTTACCATTATATGAATGATACCTTATTGGCTGA
TTCATATGCAGATACCTTAAAAAATGTTTGATGAAGTAAAGAGAATCTTG
CCTTACTGGGGGTTTACAAATTGCTCTTGAAAATATACAAAGAGGAGATT
ATTTTAGTTATCTAGGATATAAAATAGGTCTACAGAAAACCTGACTACAG
AAAGTACAAATCAAGAGAGCTCAATTATAAACTCTTAATGATTTTCAAAA
CTTGCTGGGAGATGTTAACTGGCTGTGGACCAAAATTAGTTTAACTACTC
AAGATCTAAGTAATTTATTTTCAACCTTACAAGGAGATAAGGACTTAAAT
AAC

NAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCCACAGTTGTATATAG
AGACTGTCAAAATGGGGGGGGGACAGAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAGGAAGAAAGGAAAGAAGGAAGGAAGGAAGGAAGGAAAGAAG
GGGGAAAAGGAGAAAGAAAGACTCCTTCAACACTTCTGTGTTGAGTTCGG
TCTCTCTAAGACGTTCTACCCCAGCAAGCACAGATCCACTCCTTTCTCTT
TAACAGTCTTTCAGCACCGCTGGTGTGGCCGCACCTCTTTTATTTGGATG
TGTTCATTCTATTGATGCACCCTTGGATTGTTTCCAGTTCTGTGCTGCAG
TTTAAAAAGAACAAAAAACAAAAAACAACCAAAGAGAACAAAACCTCCCT
TCCCCCACACACCTGCAGAGGTGCAGACTCTTTTTCCTTTAAATTTTAAT
TAGTATTCTGCCTCCACGTATATCTGTGTGAGGGTGTCAGATCCCCTGGA
ACTGAAATTACAGACAGTAGGGAACTGCCATGTGGTTGGTGGGATTTGAA
CTTTGGTCCTTCGGAAGGGCAGCCAATGTTCTTACCCACTGAGTCAGCTC
TCCAGCCCTGAGACACAGGTTCTTAGAGATGTTATAAAGGGTATGCACTT
TATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_k17.g1 MSMg01no451_k17.g1 CHROMAT_FILE:
MSMg01no451_k17.g1 PHD_FILE: MSMg01no451_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:00 2005
         (593 letters)



>mm_chr9_65373919_65374911
          Length = 993

 Score =  911 bits (471), Expect = 0.0
 Identities = 543/597 (90%), Gaps = 48/597 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccagccacagttgtatatagagactgtcaaaat----gggggggggacagagaaag 56
           |||||||||||| ||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 858 caggccagccacggttgtatatagagactgtcaaaatgggggggggggggacagagaaag 799

                                                                       
Query: 57  aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 116
           ||||||||||||||||||||||||||||||||||||||||                    
Sbjct: 798 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaag-------------------- 759

                                                                       
Query: 117 aaagaaagaaagaaagaggaagaaaggaaagaaggaaggaaggaaggaaggaaagaaggg 176
                     |||||||              |||||||||||||||||||||||||||||
Sbjct: 758 ----------agaaaga--------------aaggaaggaaggaaggaaggaaagaaggg 723

                                                                       
Query: 177 ggaaaaggagaaagaaagactccttcaacacttctgtgttgagttcggtctctctaagac 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ggaaaaggagaaagaaagactccttcaacacttctgtgttgagttcggtctctctaagac 663

                                                                       
Query: 237 gttctaccccagcaagcacagatccactcctttctctttaacagtctttcagcaccgctg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gttctaccccagcaagcacagatccactcctttctctttaacagtctttcagcaccgctg 603

                                                                       
Query: 297 gtgtggccgcacctcttttatttggatgtgttcattctattgatgcacccttggattgtt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gtgtggccgcacctcttttatttggatgtgttcattctattgatgcacccttggattgtt 543

                                                                       
Query: 357 tccagttctgtgctgcagtttaaaaagaacaaaaaacaaaaaacaaccaaagagaacaaa 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tccagttctgtgctgcagtttaaaaagaacaaaaaacaaaaaacaaccaaagagaacaaa 483

                                                                       
Query: 417 acctcccttcccccacacacctgcagaggtgcagactctttttcctttaaattttaatta 476
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 482 acctcccttcccccacacacctgcagagacgcagactctttttcctttaaattttaatta 423

                                                                       
Query: 477 gtattctgcctccacgtatatctgtgtgagggtgtcagatcccctggaactgaaattaca 536
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 422 gtattctgcctccacgtatatctgtgtgagggtgtcagagctcctggaactgaaattaca 363

                                                                    
Query: 537 gacagtagggaactgccatgtggttggtgggatttgaactttggtccttcggaaggg 593
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 362 gacagtagggaactgccatgtggttggtgggatttgaactttggtcctttggaaggg 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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