NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTGACTATAGCGATTTCATGTTACTCACAATAGAGAAATATG
GCAGAAAAAGTCAACTAAATTCTTTATTCATAAAAAACTCTAAATAGTAT
AACAATCTGGACACGTATCTTGTTGAATTCTTTATTTGTCATTTTAATTA
TGTATTATGTGTATATTTCTGTGTATGGGTGTGTACGTATGTCCAGAAGG
CCAGTACTTGCCCAGGAGGCCAGAGGTGTTGGATTCTCTGGCGTTAGAGA
AATGTGAGCTACCTGACACTCATGCTGGGATTAGAACTCAGGTCCTTTCT
TACAGCAATCTGTGCTCTGGACTGCAGAGCCATCTCTCCAGCCCTGTTTC
TTTTTTTGAATTTAAAATGTACGCCTTTAATCCCAGCACTTGGGAGGCAG
AGGCAGGTGGATTTCTGAGTTCGAGGTCAGCCTGGTCTACAGAGTGAGTT
CCAGGACAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAAC
AAAACAAAACAAAACAAAACTGTACTGATGATGTTTTTTTTTCTTGTTCT
TAGAAGGGCTCAAGAGAGGGTTTTACATAGATGTATCATACCTTCAATAT
GATTTTTAGTCAATGTATGGCCGTGATATCCATCCCGGTTTCAGTAACAA
AACATCTGATAAAAGCACATACTGTTTATCATTCTTATAACCCAGGAAAG
ATATTTAAAAATCAACN

NCCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTA
TCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAG
ATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATT
GATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTA
CTTGGTCAGGATGGATGATTTCTTTAATGTGTTCTTGGATTCGGTTAGCG
AGAATTTTATTAAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCT
GAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAA
TAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATCTTG
TGAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATA
GAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGAC
TATTAATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGG
TCAACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTT
GTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAAGCTTTTGTAGA
AGGATCTGATGGTGTTTTGGATTTCTTCAGGATCTGTTGTTATGTCTCCC
TTTT

Query= MSMg01no451_n11.b1 MSMg01no451_n11.b1 CHROMAT_FILE:
MSMg01no451_n11.b1 PHD_FILE: MSMg01no451_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:14 2005
         (697 letters)



>mm_chr9_86670535_86671632
          Length = 1098

 Score = 1299 bits (672), Expect = 0.0
 Identities = 691/700 (98%), Gaps = 7/700 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgactatagcgatttcatgttactcacaatagagaaatatggcagaaaaagt 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaattcagtgacaatagcgatttcatgttactcacaatagagaaatatggcagaaaaagt 258

                                                                       
Query: 65  caactaaattctttattcataaaaaa-ctctaaatagtataacaatctggacacgtatct 123
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 259 caactaaattctttattcataaaaaaactctaaatagtataacaatctggacacgtatct 318

                                                                       
Query: 124 tgttgaattctttatttgtcattttaattatgtattatgtgtatatttctgtgtatgggt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgttgaattctttatttgtcattttaattatgtattatgtgtatatttctgtgtatgggt 378

                                                                       
Query: 184 gtgtacgtatgtccagaaggccagtacttgcccaggaggccagaggtgttggattctctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtgtacgtatgtccagaaggccagtacttgcccaggaggccagaggtgttggattctctg 438

                                                                       
Query: 244 gcgttagagaaatgtgagctacctgacactcatgctgggattagaactcaggtcctttct 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 439 gcgttagagaaatgtgagctacctgacactcatgctgggattagaactcaggtcctctct 498

                                                                       
Query: 304 tacagcaatctgtgctctggactgcagagccatctctccagccctgtttctttttttgaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tacagcaatctgtgctctggactgcagagccatctctccagccctgtttctttttttgaa 558

                                                                       
Query: 364 tttaaaatgtacgcctttaatcccagcacttgggaggcagaggcaggtggatttctgagt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttaaaatgtacgcctttaatcccagcacttgggaggcagaggcaggtggatttctgagt 618

                                                                       
Query: 424 tcgaggtcagcctggtctacagagtgagttccaggacaggacagccagggctacacagag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tcgaggtcagcctggtctacagagtgagttccaggacaggacagccagggctacacagag 678

                                                                       
Query: 484 aaaccctgtctcaaaaaaacaaaacaaaacaaaacaaaac-----tgtactgatgatgtt 538
           ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||
Sbjct: 679 aaaccctgtctcaaaaaaacaaaacaaaacaaaacaaaacaaaactgtactgatgatgtt 738

                                                                       
Query: 539 ttttttt-cttgttcttagaagggctcaagagagggttttacatagatgtatcatacctt 597
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttttttttcttgttcttagaagggctcaagagagggttttacatagatgtatcatacctt 798

                                                                       
Query: 598 caatatgatttttagtcaatgtatggccgtgatatccatcccggtttcagtaacaaaaca 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 caatatgatttttagtcaatgtatggccgtgatatccatcccggtttcagtaacaaaaca 858

                                                   
Query: 658 tctgataaaagcacatactgtttatcattcttataaccca 697
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tctgataaaagcacatactgtttatcattcttataaccca 898


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1098
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1088
Effective search space:   747456
Effective search space used:   747456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)