Query= MSMg01no452_a16.b1 MSMg01no452_a16.b1 CHROMAT_FILE:
MSMg01no452_a16.b1 PHD_FILE: MSMg01no452_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:29 2005
(698 letters)
>mm_chr9_117836038_117837135
Length = 1098
Score = 1156 bits (598), Expect = 0.0
Identities = 685/748 (91%), Gaps = 54/748 (7%)
Strand = Plus / Minus
Query: 5 gaattcttaacttcctctcttgtttcccccatgctcacccagggacactacatctctgcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gaattcttaacttcctctcttgtttcccccatgctcacccagggacactacatctctgcc 712
Query: 65 agtccctctcagtgatagctggatttagaagtgggtggatcgttcatgcatgtcagactg 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 agttcctctcagtgatagctggatttagaagtgggtggatcgttcatgcatgtcagactg 652
Query: 125 caggcttcggttagatccttacccagtatgaagacatgggtcctccatattttttctagc 184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 651 caggcttcggttagatccttacccagtatgaagacatggatcctccatattttttctagc 592
Query: 185 tctcctgcagatagggcctcccttggtggtgcgggttctctgtgtagtagaggcttgcct 244
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 591 tctcctgcagatagggcctcccttggtggtgtgggttctctgtgtagtagaggctttcct 532
Query: 245 caaacatgaatccatctgtctcagctctaactcctaagagctggagccgtaggtgttcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 caaacatgaatccatctgtctcagctctaactcctaagagctggagccgtaggtgttcag 472
Query: 305 ttaaagatgagtctttaacgcctttcttcctgagttaaagattaaggaaagtgtacagaa 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ctaaagatgagtctttaacgcctttcttcctgagttaaagattaaggaaagtgtacagaa 412
Query: 365 tgtagcatcctagagatgaacgtgttagaggaagtagacgtcagcctttgctgaggtgga 424
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgtagcatcctagagatgaatgtgttagaggaagtagacgtcagcctttgctgaggtgga 352
Query: 425 aaacacagaaagctcccactcagtgccagcagcacagctgccccgatctgcaggctgtga 484
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 351 aaacacagaaagctcccactcagtgccagcagcacagctgccctgatctgcaggctgtga 292
Query: 485 ctcggcctacagtgcatttcccaccacgcttcccatgtgtggctgcacttgtagaacagg 544
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ctcagcctacagtgcatttcccaccacgcttcccatgtgtggctgcacttgtagaacagg 232
Query: 545 atgtgtagactggtgacatgggtaataatacaaatt------------------------ 580
||||||||||||||||||||||||||||||||||||
Sbjct: 231 atgtgtagactggtgacatgggtaataatacaaattacacacacacacacacacacacac 172
Query: 581 ----acata-------------------------a-atatatatatattatacaataaca 610
||||| | |||||||||||| |||||||||||
Sbjct: 171 acacacatatatatatgtatatatatgtgtgtatatatatatatatataatacaataaca 112
Query: 611 aataatacatctatacaataatacaaatataaatatacaaattattccttcttagcaatt 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 aataatacatctatacaataatacaaatataaatatacaaattattccttcttagcaatt 52
Query: 671 gtgtgctcagttcaacactacatggttt 698
||||||||||||||||||||||||||||
Sbjct: 51 gtgtgctcagttcaacactacatggttt 24
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space: 748544
Effective search space used: 748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_a16.g1 MSMg01no452_a16.g1 CHROMAT_FILE:
MSMg01no452_a16.g1 PHD_FILE: MSMg01no452_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:29 2005
(646 letters)
>mm_chr9_117663034_117664079
Length = 1046
Score = 1205 bits (623), Expect = 0.0
Identities = 644/661 (97%), Gaps = 16/661 (2%)
Strand = Plus / Plus
Query: 1 ttcgcatgagttctggggctccaattcggattctcaagcctgccgggcaaacccttcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcgcatgagttctggggctccaattcggattctcaagcctgccgggcaaacccttcacc 260
Query: 61 aaatgagccatcttcccgacgttcagaatctccgttgacctgagctgacaagaggataag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgagccatcttcccgacgttcagaatctccgttgacctgagctgacaagaggataag 320
Query: 121 ggagctctgcacattttcaatgaccccctcttcacgtagacagccaatgattgccaagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagctctgcacattttcaatgaccccctcttcacgtagacagccaatgattgccaagtt 380
Query: 181 tcgagcgctccagaggcccgtctctcagctcccatcgtccaggcatctccactgtgctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgagcgctccagaggcccgtctctcagctcccatcgtccaggcatctccactgtgctct 440
Query: 241 ccatccttggagaagggcaacctcaagtctcttctggtacttaaccatgctgatgtctcc 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatccttggagaagggtaacctcaagtctcttctggtacttaaccatgctgatgtctcc 500
Query: 301 tgagtagcgtgagctggttctacacggcactcagtgagacggctctacattttcattcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagtagcgtgagctggttctacacggcactcagtgagacggctctacattttcattcac 560
Query: 361 agaacagaagatttattttaacttttagtgtgtgtgtgtgtgtgtgtgtgt--------- 411
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaacagaagatttattttaacttttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 620
Query: 412 -------tcgtgcatatacacaggagccatgtcacatgtatggaagtcaaatgacaactt 464
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgtgttcgtgcatatacacaggagccatgtcacatgtatggaagtcaaatgacaactt 680
Query: 465 gaaggagtcagcccttgccttccaccatgtgggttccagcaactggactccagccatcag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaggagtcagcccttgccttccaccatgtgggttccagcaactggactccagccatcag 740
Query: 525 ggctgggtgcgagcacctttatctgcggagctatctcagcagctggagaactttctttaa 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggctgggtgcgagcacctttatctgcggagctatctcagcagctggagaactttctttaa 800
Query: 585 ataaagcgggacaggccagtggagcttctatgtacaagaccctgcctcatcgcttctgaa 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ataaagcgggacaggccagtggagcttctatgtacaagaccctgcctcatcgcttctgaa 860
Query: 645 g 645
|
Sbjct: 861 g 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
