Query= MSMg01no452_k16.b1 MSMg01no452_k16.b1 CHROMAT_FILE:
MSMg01no452_k16.b1 PHD_FILE: MSMg01no452_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:17 2005
(686 letters)
>mm_chr9_44250757_44251842
Length = 1086
Score = 1237 bits (640), Expect = 0.0
Identities = 675/696 (96%), Gaps = 19/696 (2%)
Strand = Plus / Plus
Query: 1 acacacggaggcaaaatgaccgatacatgtaaaatcaaaagtaaattattt--aaaaaaa 58
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 200 acacacggaggcaaaatgaccgatacatgtaaaatcaaaagtaaattatttaaaaaaaaa 259
Query: 59 aagattacaggcaggcatcatcatgttctgctcatgtttatacatatatgttacatttta 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aagattacaggcaggcatcatcatgttctgctcatgtttatacatatatgttacatttta 319
Query: 119 tttatgtgtgtacatgcatgcgagcatgccacggtgctagtgaggaggtcaggggacaac 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttatgtgtgtacatgcatgcgagcatgccacggtgctagtgaggaggtcaggggacaac 379
Query: 179 ctgggagagttggttctctaaaga-gt-------tgtagctctttatccaggaattccct 230
||||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct: 380 ctgggagagttggttct---gagacgtttcattatgtagctctttatccaggaattccct 436
Query: 231 caaattcaaatagacccacctgcctctgcctctggagtgctgggattaaaggtgcgcact 290
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 437 caaattcaaatagacccacctgcctctgc------agtgctgggattaaaggtgcgcact 490
Query: 291 gccggacccagctccttgttatgctatgttttgttttgtttttcctaattgatggctgat 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gccggacccagctccttgttatgctatgttttgttttgtttttcctaattgatggctgat 550
Query: 351 tgatgctgagaatagaatccagggccttaggtgtgctaggccactgctctgccacggggt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgatgctgagaatagaatccagggccttaggtgtgctaggccactgctctgccacggggt 610
Query: 411 tacatctgatttttagggctggagagataactcagaggtaaagacacttgttcagtcgag 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 611 tacatctgatttttagggctggagagataactcagaggtaaagacacttgttcagtcaag 670
Query: 471 aggacaggagttcaggtgtcagtagctgtgtccccatagtaaacccttaaaagtgtatca 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aggacaggagttcaggtgtcagtagctgtgtccccatagtaaacccttaaaagtgtatca 730
Query: 531 tttcgaatgaattatttaataatttgtcaacagcatatcctttcacccaggaacacttta 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tttcgaatgaattatttaataatttgtcaacagcatatcctttcacccaggaacacttta 790
Query: 591 attggtatttcctaaaaagcagatattagattacatagacaaaaatcgggagttggaact 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 attggtatttcctaaaaagcagatattagattacatagacaaaaatcgggagttggaact 850
Query: 651 ttctttctgtctgttggtctatctgcctttcaagac 686
||||||||||||||||||||||||||||||||||||
Sbjct: 851 ttctttctgtctgttggtctatctgcctttcaagac 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_k16.g1 MSMg01no452_k16.g1 CHROMAT_FILE:
MSMg01no452_k16.g1 PHD_FILE: MSMg01no452_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:17 2005
(649 letters)
>mm_chr9_44414025_44415068
Length = 1044
Score = 1185 bits (613), Expect = 0.0
Identities = 638/649 (98%), Gaps = 5/649 (0%)
Strand = Plus / Minus
Query: 1 agtcctgccacctttaaaagtcattacgtttaattgcattaagacttgaaatatcactca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 agtcctgccacctttaaaagtcattacgtttaattgcattaagacttgaaatatcactca 785
Query: 61 atttacttaatgtacatctagatttgaccaagacaagttattaactttttttctatttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 atttacttaatgtacatctagatttgaccaagacaagttattaactttttttctatttct 725
Query: 121 gacagaaaccaaaaaccttaaaatgagaagacttttcaaaaaaaaaaaaaagttgaaagc 180
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 724 gacagaaaccaaaaaccttaaaacgagaagacttttc-----aaaaaaaaagttgaaagc 670
Query: 181 tgttagtgctgccttttaatacaacacttttcaaaataaagttcaaaggtgggggcgggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tgttagtgctgccttttaatacaacacttttcaaaataaagttcaaaggtgggggcgggg 610
Query: 241 agtcctgtagttaagggggaaagaaataccagagagttaaacttacaggtttaataaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 agtcctgtagttaagggggaaagaaataccagagagttaaacttacaggtttaataaaat 550
Query: 301 tctcccaaatcacctagaatacagcgtctaattaacagttattttaagaaagagttggtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tctcccaaatcacctagaatacagcgtctaattaacagttattttaagaaagagttggtc 490
Query: 361 aacctcctctactttaaattgttccccaaatggaattctcaaaatttggtaaataaaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aacctcctctactttaaattgttccccaaatggaattctcaaaatttggtaaataaaata 430
Query: 421 ttactaaggactagtaagtataagtccaactccttcagttttattttgtaacccccttac 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttactaaggacttgtaagtataagtccaactccttcagttttattttgtaacccccttac 370
Query: 481 atttcactggcacccgaaacactagcttaattagtactggttatctttgcctcacaccaa 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 369 atttcactggcacccgaaacactagcttaattagtactggttatctttgcctcaaaccaa 310
Query: 541 gtatcccaaatccataatttagaagtcaaaagatatctcaagttaaatacatcaacttgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtatcccaaatccataatttagaagtcaaaagatatctcaagttaaatacatcaacttgc 250
Query: 601 tcacaaatgcttctatcacattaaattgcttattttttatcttaatagg 649
|||||||||||||||||||||||||||| |||||| |||||| ||||||
Sbjct: 249 tcacaaatgcttctatcacattaaattgtttatttgttatctcaatagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1044
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1034
Effective search space: 660726
Effective search space used: 660726
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
