BAC Information

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BAC

Clone NameMSMg01-452L07
Chromosome9 (Build37)
Map Location 72,285,874 - 72,286,101
singlet/doubletsinglet
Overlap geneMns1
Upstream geneGrinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, LOC666007
Downstream geneTex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452L07.T7 (MSMg01no452_l07.b1)MSMg01-452L07.TJ (MSMg01no452_l07.g1)
ACCAG539894AG539895
length761759
length of high quality
(start - end)
67 (165 - 231)228 (406 - 633)
definitionCHROMAT_FILE: MSMg01no452_l07.b1 PHD_FILE: MSMg01no452_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:21 2005CHROMAT_FILE: MSMg01no452_l07.g1 PHD_FILE: MSMg01no452_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCGTGAGTGCCTTTAGAGAACAGCGTACCACATACCA
CACAGGGGAGGTGAGAACAATGACCATCTTCAACACAGTCAACAGATCTG
CGAGAAGGAAATCAGGGAAATTCAAGAGACCTGGGGGGATTCTTTAATGT
ATACTGATGTGATAAACTGTATGTACCTGTACAGAAAGCAACATACCTTA
CACTATAGGACAATTTGAGCTAGATCGAAAACTAACAATAAAAGCTGAAA
CTATAATGTATCTTGGTGAAAAAAAAAACTTTACAAAAATTCTACAACCT
TGAAAGCCAGAAAACCATTTACAAAATGCAGGAGAAATAACCTTTGAAAG
AGCACTGGAGAGATGGCTCAGCATGTAACAGTACTGACTGCTCTTCAAAT
GGTCCTGAGTTCAATTCCCAGCCACCACATGATGGCTCACAACCACCTAT
ACAGCTAGAGTGCACTCGTATACATACAAATAAATGAAAGAGAAATAAAT
TATTAAGCACGGGTGATTCTATACACCTTTAATGTCAGCACTCAAGAGGC
AAAGGTAGGATGATTAAAATATTAAGATCATTTTCCAGCTAGGTAGTGAA
CCAAGGACTAGCCTGGGTAGGCTACATGGGCTTGGATACTATAAACATGA
AAAGCAAGTTCTATGTGTTGAAAGCATCAATTAAGAGAATATTTGCAGGA
TAAATCTGATA
NCTTTTTCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCATTATATGCTTTG
CCCCACAGTCAGTTTCATATATGATTTACTTTTGTATTTTTGGTTTTTTG
TGTTTTTTTGAGACAGAGTTTCTCTGTATAGACCTGGCTGTCCTGACTCT
GTATACCATGCTGGGCTCAATCTCAGAAATCTGCCTGCCGAGTGCTGGGA
TTAAAGGTGTGCGGTGACTATTATCATTATTGTTATTAATGAATATGGTG
GGGGGTCTAGACCACCCTGATTGGTGCCATCCCTCGGCACTGGCTCCTGG
CCTTAGAGAGAACTGGTATTGCAGGTATGCAGCCACATCTGTTCCGTTTT
TACGAGCTCTCCAGTCTCACACTCCGCTAGCGATCCAGTGGCTTCTGTTC
CAGGTAAGTAAATAGGTCTCGTCCGTGTCTCTAAATTCTCAAAATATTTC
ATCTCTAAAATGAGTGTATCAGGGATGGAGCAATGGCTCGGTGGGGGGCC
CTGCTGCTCTTTTGGAGGGCCCAGCACCCACGTTAGGCAACTTGCTACCG
CCTGAGGATGGTAGAGGGGCACCATCCCTCAGTCCACTGCAGTGACAAGT
CCGAGCTTATTGTGGTTCCTTGGGGCTTTAGCTGGGCTCCAGACCGCAGA
GAATAGCTCCCTTCGGATGTAAACGGCTCCCGCTAGGAAACAGCGTCCGA
ACTTCGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_l07.g1 MSMg01no452_l07.g1 CHROMAT_FILE:
MSMg01no452_l07.g1 PHD_FILE: MSMg01no452_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:21 2005
         (228 letters)



>mm_chr9_72285674_72286301
          Length = 628

 Score =  418 bits (216), Expect = e-121
 Identities = 225/228 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctctccagtctcacactccgctagcgatccagtggcttctgttccaggtaagtaaatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctctccagtctcacactccgctagcgatccagtggcttctgttccaggtaagtaaatag 260

                                                                       
Query: 61  gtctcgtccgtgtctctaaattctcaaaatatttcatctctaaaatgagtgtatcaggga 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctcgtccgtgtctctaagttctcaaaatatttcatctctaaaatgagtgtatcaggga 320

                                                                       
Query: 121 tggagcaatggctcggtggggggccctgctgctcttttggagggcccagcacccacgtta 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggagcaatggctcggtagggggccctgctgctcttttggagggcccagcacccacgtta 380

                                                           
Query: 181 ggcaacttgctaccgcctgaggatggtagaggggcaccatccctcagt 228
           ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ggcaacttgctaccgactgaggatggtagaggggcaccatccctcagt 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)