BAC Information

Click to search

BAC

Clone NameMSMg01-452P08
Chromosome9 (Build37)
Map Location 38,322,619 - 38,323,303
singlet/doubletsinglet
Overlap genenone
Upstream geneBC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907
Downstream geneOlfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452P08.T7 (MSMg01no452_p08.b1)MSMg01-452P08.TJ (MSMg01no452_p08.g1)
ACCAG540087AG540088
length746742
length of high quality
(start - end)		689 (52 - 740)641 (79 - 719)
definitionCHROMAT_FILE: MSMg01no452_p08.b1 PHD_FILE: MSMg01no452_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:40 2005CHROMAT_FILE: MSMg01no452_p08.g1 PHD_FILE: MSMg01no452_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATCCTTCGTCTCCTTTTTGTCATTGCTTCAGCCCTGGC
CTGATATGTGGAGAACCATTTCCAACCTAGAGCTAACCTCATCTAGCTAC
AACTGTTATGGCTTCAGGACCAAAATATTTTTCCAAATCTAATCAAAATT
TAAATTTATCCAGATTCCCTGAGTGACTAGAAACCTGTGCTTGCTATAGG
AAAACAATCAATACATATCTGAGAGATGATACTTAGGATGAACATTTATT
GACTGTGACATTGTATCACTGTGTCTCCTGAAACTTTTAATACCTCATGC
AATCTTCTCCAGGACATTCTTCTGTGAATTTCATTTGATTTTTAGAATTG
CATGATATTAAATTAACGGATACTCCTGAAATCCTAGGACTTCACTTCAA
TGTCAAACCAGCCACAGGATAATGTCCAAGTTACTAAAGGAAATCACTGT
GTCATATCTTTAATATGTGCAAGGAAAACAGTTATATATATAAACAGAAT
GTAGTATATTGGTTGCTGTGGCTCATAATTTTCAAAATCATAGAGCTACC
AGATAAATTTGCAAAATCATTCAAATGTTAAACATACTTTAGCCTGGTGG
CACATACCTTTAATACCAGCACTTCGGAGGCAGACACAGGCAGATTTCTG
AGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAG

NNCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCAT
TTTTTAATGGGGTTATTTGATTTTCTGGAGTCAACCTTCTTGAGTTCTTT
ATATATATTGGATATTAGTCCCCTATCCGATTTGGGATAGGTAAAGATCC
TTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGATAGGACACTTTACC
CTTTCTTAGAAATGGGAACAAAACACCCATAGAAGGAGTTACAGAGACAA
AATTTGGAGCTGTGATGAAAGGATGGACCATCTAGTGACTGCCATATGCA
GGAATCCATCCCATAATCAGCCTCCAAATGCTGACACCATTGCATACACT
AGCAAGATTTCGCTGAAACCACCCAGTTATAGCTCTCTCTTGTGAGACTA
TGCCGGGGCCTAGCAAACACAGAAGTGGATGATCACAGTCAGCTATTGGA
TGAGTCACACGACCCCTAATGGAGGAGCTATTGAAATTACCCAAGGAGCT
ATAGGGAACTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTA
CCCGGGAGCTCTTGTCTTTAGCTGCATATGTATCAAAAGATGGCCTAGTC
GGCCATCACTGCAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCC
CAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_p08.b1 MSMg01no452_p08.b1 CHROMAT_FILE:
MSMg01no452_p08.b1 PHD_FILE: MSMg01no452_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:40 2005
         (689 letters)



>mm_chr9_38322511_38323599
          Length = 1089

 Score = 1270 bits (657), Expect = 0.0
 Identities = 678/685 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatccttcgtctcctttttgtcattgcttcagccctggcctgatatgtggagaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gaattccatccttcgtctcctttttgtcattgcttcagccctggcctgatatgtggagaa 734

                                                                       
Query: 65  ccatttccaacctagagctaacctcatctagctacaactgttatggcttcaggaccaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ccatttccaacctagagctaacctcatctagctacaactgttatggcttcaggaccaaaa 674

                                                                       
Query: 125 tatttttccaaatctaatcaaaatttaaatttatccagattccctgagtgactagaaacc 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tattttttcaaatctaatcaaaatttaaatttatccagattccctgagtgactagaaacc 614

                                                                       
Query: 185 tgtgcttgctataggaaaacaatcaatacatatctgagagatgatacttaggatgaacat 244
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 613 tgtgcttgctataggaaaacaatcaatacatatctgagagatgacacttaggatgaacat 554

                                                                       
Query: 245 ttattgactgtgacattgtatcactgtgtctcctgaaacttttaatacctcatgcaatct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttattgactgtgacattgtatcactgtgtctcctgaaacttttaatacctcatgcaatct 494

                                                                       
Query: 305 tctccaggacattcttctgtgaatttcatttgatttttagaattgcatgatattaaatta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tctccaggacattcttctgtgaatttcatttgatttttagaattgcatgatattaaatta 434

                                                                       
Query: 365 acggatactcctgaaatcctaggacttcacttcaatgtcaaaccagccacaggataatgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 acggatactcctgaaatcctaggacttcacttcaatgtcaaaccagccacaggataatgt 374

                                                                       
Query: 425 ccaagttactaaaggaaatcactgtgtcatatctttaatatgtgcaaggaaaacagttat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ccaagttactaaaggaaatcactgtgtcatatctttaatatgtgcaaggaaaacagttat 314

                                                                       
Query: 485 atatataaacagaatgtagtatattggttgctgtggctcataattttcaaaatcatagag 544
           ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 313 atatataaacagaatgtagtatattggctgctgtggctcataattttcaaaagcatagag 254

                                                                       
Query: 545 ctaccagataaatttgcaaaatcattcaaatgttaaacatactttagcctggtggcacat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 253 ctaccagataaatttgcaaaatcattcaaatgttaaacatactttagcctggtagcacat 194

                                                                       
Query: 605 acctttaataccagcacttcggaggcagacacaggcagatttctgagtttgaggccagcc 664
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 acctttaataccagcacttgggaggcagacacaggcagatttctgagtttgaggccagcc 134

                                    
Query: 665 tggtctacagagtgagttccaggac 689
           ||||| |||||||||||||||||||
Sbjct: 133 tggtcgacagagtgagttccaggac 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |