Query= MSMg01no452_p14.b1 MSMg01no452_p14.b1 CHROMAT_FILE:
MSMg01no452_p14.b1 PHD_FILE: MSMg01no452_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:42 2005
(669 letters)
>mm_chr9_54046908_54047975
Length = 1068
Score = 1131 bits (585), Expect = 0.0
Identities = 637/667 (95%), Gaps = 23/667 (3%)
Strand = Plus / Plus
Query: 4 ggaattccctccagtctctccttggccccaccccatccacctctcaagccccagctgccc 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccctccagtctttccttggccccaccccatccacctctcaagccccagctgccc 263
Query: 64 tgcctacacacagccacttagatgccctcaccgggaccccgtggtcgcgttgaatacaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgcctacacacagccacttagatgccctcaccgggaccccgtggtcgcgttgaatacaaa 323
Query: 124 cttgtcaagcctctccaaacctccagaccagagccttcttgtattggcttcagaatcttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttgtcaagcctctccaaacctccagaccagagccttcttgtattggcttcagaatcttg 383
Query: 184 gcacctctcatccttccttctccctatctttttaactggctgctcctcctatcatagcct 243
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcacttctcatccttccttctccctatctttttaactggctgctcctcctatcatagcct 443
Query: 244 ccccatgtccagtcacagcaagctatcaccacccccaccaaaaaaa-gtcctgaacctaa 302
|||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct: 444 ccccatgtccagtcacagcaagctatcacc-ccccc-ccaaaaaaaagtcctgaacctaa 501
Query: 303 agaaaggtattctcctttatttccttgggcttctggcccatgttttacttgttatcagta 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agaaaggtattctcctttatttccttgggcttctggcccatgttttacttgttatcagta 561
Query: 363 tagaaatgtttaatggttgaagaatgatgtctccagaaaagccatttttcatgtttccaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tagaaatgtttaatggttgaagaatgatgtctccagaaaagccatttttcatgtttccaa 621
Query: 423 aactgatttgatagatttatttatttatttatttatttatttatttatttatttatttat 482
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aactgatttgatagatttatttatttatttatttatttatttatttattt---------- 671
Query: 483 ttatttatttggtttttcgagacaaggtttctctgcgtagccctggctctcctggaactc 542
|||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 672 ----------ggtttttcgagacaaggtttctctgcgtagccctggctctcctggatctc 721
Query: 543 actctgtagaccaggctggcctcaaactcagaaatccacctgcctctgcttcccaagtgc 602
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 722 actctgtagaccaggctggcctcaaactcagaaatacatctgcctctgcttcccaagtgc 781
Query: 603 tgggattaaaggcgtgcgccaacaccacctggctagacttgtttattcataagttgataa 662
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tgggattaaaggcgtgcaccaccaccacctggctagacttgtttattcataagttgataa 841
Query: 663 tattcgt 669
|||||||
Sbjct: 842 tattcgt 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space: 697222
Effective search space used: 697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_p14.g1 MSMg01no452_p14.g1 CHROMAT_FILE:
MSMg01no452_p14.g1 PHD_FILE: MSMg01no452_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:42 2005
(632 letters)
>mm_chr9_54229948_54230979
Length = 1032
Score = 934 bits (483), Expect = 0.0
Identities = 495/499 (99%), Gaps = 1/499 (0%)
Strand = Plus / Minus
Query: 1 tctggtaagtttggaatttgaaagtcaatgttgttaaatataataaattgctatcaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tctggtaagtttggaatttgaaagtcaatgttgttaaatataataaattgctatcaaatt 440
Query: 61 aatgttcaaaatccatgtagaaggccacttactatttttaaaatgctgcactagatattt 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 439 aatgttcaaaatccatgtagaaggctacttactatttttaaaatgctgcactagatattt 380
Query: 121 tgcagtcttctgtactacatgctgcagcctgtggttagaatctgataaagcactgcagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgcagtcttctgtactacatgctgcagcctgtggttagaatctgataaagcactgcagtg 320
Query: 181 ttgcccagcagagaaagaatgagaatccagaacaggaaagctgcacactgttctctgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttgcccagcagagaaagaatgagaatccagaacaggaaagctgcacactgttctctgttc 260
Query: 241 gctttattgccttccgttttgttgaaagtattaagactaagattaaggatattctcccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gctttattgccttccgttttgttgaaagtattaagactaagattaaggatattctcccag 200
Query: 301 gctggagatggctcagtggttaagagcactgactgctcttccaaacgccctgagttcaat 360
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 199 gctggagatggctcagtggttaagagcactgactgctcttccaaaggtcctgagttcaat 140
Query: 361 tcccagcaaccacatggtggctcacaaccatctgtaatgacatccagtgccctcttccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 tcccagcaaccacatggtggctcacaaccatctgtaatgacatccagtgccctcttccag 80
Query: 421 tgtgtctgaagagtgtgacagtgtattcacatatattaaataattaaataaataaatct- 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 tgtgtctgaagagtgtgacagtgtattcacatatattaaataattaaataaataaatcta 20
Query: 480 aaaaaaaaatattctccca 498
|||||||||||||||||||
Sbjct: 19 aaaaaaaaatattctccca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
