BAC Information

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BAC

Clone NameMSMg01-453A15
Chromosome9 (Build37)
Map Location 74,235,351 - 74,236,038
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc13c, Wdr72, Nr1h2-ps
Downstream geneLOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453A15.T7 (MSMg01no453_a15.b1)MSMg01-453A15.TJ (MSMg01no453_a15.g1)
ACCAG540148AG540149
length754764
length of high quality
(start - end)
525 (175 - 699)688 (77 - 764)
definitionCHROMAT_FILE: MSMg01no453_a15.b1 PHD_FILE: MSMg01no453_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:46 2005CHROMAT_FILE: MSMg01no453_a15.g1 PHD_FILE: MSMg01no453_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTATAAXXXXXXXXXXXXXXXXXXXXXXATTTTCCAGAGGATCCGCGG
ATTCTTTGTTCTTCCTGAGCCCCATTTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTANGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGGAGTTTCATG
AGGTCCCATTTGTCAATTCTCAATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTCCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATC
CACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCAT
TCTTCTACATGATAACAACCAGTTGTGCCAGCATCATTTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTTAATTCTATTCCATTGGTC
TACTTGTCTGTCAGTATACCAGTACCATGCAGTTTTTATCACAATTGCTC
TGTAGTAAAACTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTA
TCCTTGAGAAGAGTTTTTGCTATCCTTAGGTTTTTGTTATTCCAGATGAA
TTTG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAGTTAAAAGCGTTCATCTTTTT
ATCTTGTTCTCTATCATCTCAGCATGGTCTTTGCCAGAGAGGACATCATC
AAAGGTGACAATATCCATCAACCATCCTGGGGTTCCACAAATGAGTCGTC
TAAAGATGCGTTTTGTAGGCTCACGGGCCAACCAAGGGTATAACTTAATA
GAGATTGTTTTAGGTGCCTAAAAACTTCTAATATCCCCTAGGGTCTTTCT
TCAGAAAGTGTCAGATTTTCCCTTTCAGTTTTCTTTTTAACTTAGAGTCA
CACTCCTACCTCTGTGCTTGTTTGATTGGAGTCTCTCTAAACAAGAAAGC
AATGATCAGTAATTGGGGTTTTTAAGATTTATCTAATTTGTAATTATGCA
CGTATGTGCCTGTGTGTGATTATGTGCACGTGAGCACAATGCCTGAACAA
TCCAGAAGAGGTGGCCAATCAGCCCTCCTCCCCAGGAACGGTCATCAAAT
GCCCTAGTGCTGGAGTTACAGGCAGCTGTGAGCTACCTGACATGGATGCT
GGAAACTGAGTTGAAGTCCTCTGCAAGATCAACAAGTGTTCTTAACTACT
GAGTCATCTTTCCAACCCTAGTAGCTACAAATTATGAGGCAAGACTCCAG
TACAAGAAGGCTAATTACAATGTACATTTCTTTGCTTTTGAGTGGAGTAG
TGATATCATACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_a15.g1 MSMg01no453_a15.g1 CHROMAT_FILE:
MSMg01no453_a15.g1 PHD_FILE: MSMg01no453_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:47 2005
         (688 letters)



>mm_chr9_74235151_74236238
          Length = 1088

 Score = 1307 bits (676), Expect = 0.0
 Identities = 685/688 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagttaaaagcgttcatctttttatcttgttctctatcatctcagcatggtctttgcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagttaaaagcgttcatctttttatcttgttctctatcatctcagcatggtctttgcca 260

                                                                       
Query: 61  gagaggacatcatcaaaggtgacaatatccatcaaccatcctggggttccacaaatgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaggacatcatcaaaggtgacaatatccatcaaccatcctggggttccacaaatgagt 320

                                                                       
Query: 121 cgtctaaagatgcgttttgtaggctcacgggccaaccaagggtataacttaatagagatt 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 cgtctaaagatgcgttttgtaggctcacaggccaaccaagggtataacttaatagagatt 380

                                                                       
Query: 181 gttttaggtgcctaaaaacttctaatatcccctagggtctttcttcagaaagtgtcagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttaggtgcctaaaaacttctaatatcccctagggtctttcttcagaaagtgtcagat 440

                                                                       
Query: 241 tttccctttcagttttctttttaacttagagtcacactcctacctctgtgcttgtttgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttccctttcagttttctttttaacttagagtcacactcctacctctgtgcttgtttgat 500

                                                                       
Query: 301 tggagtctctctaaacaagaaagcaatgatcagtaattggggtttttaagatttatctaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggagtctctctaaacaagaaagcaatgatcagtaattggggtttttaagatttatctaa 560

                                                                       
Query: 361 tttgtaattatgcacgtatgtgcctgtgtgtgattatgtgcacgtgagcacaatgcctga 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgtaattatgcatgtatgtgcctgtgtgtgattatgtgcacgtgagcacaatgcctga 620

                                                                       
Query: 421 acaatccagaagaggtggccaatcagccctcctccccaggaacggtcatcaaatgcccta 480
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaatccagaagaggtggtcaatcagccctcctccccaggaacggtcatcaaatgcccta 680

                                                                       
Query: 481 gtgctggagttacaggcagctgtgagctacctgacatggatgctggaaactgagttgaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgctggagttacaggcagctgtgagctacctgacatggatgctggaaactgagttgaag 740

                                                                       
Query: 541 tcctctgcaagatcaacaagtgttcttaactactgagtcatctttccaaccctagtagct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcctctgcaagatcaacaagtgttcttaactactgagtcatctttccaaccctagtagct 800

                                                                       
Query: 601 acaaattatgaggcaagactccagtacaagaaggctaattacaatgtacatttctttgct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acaaattatgaggcaagactccagtacaagaaggctaattacaatgtacatttctttgct 860

                                       
Query: 661 tttgagtggagtagtgatatcatacctg 688
           ||||||||||||||||||||||||||||
Sbjct: 861 tttgagtggagtagtgatatcatacctg 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)