BAC Information

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BAC

Clone NameMSMg01-453H15
Chromosome9 (Build37)
Map Location 103,868,535 - 103,869,052
singlet/doubletsinglet
Overlap genenone
Upstream geneSlco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik, EG384978
Downstream geneNphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16, Acpp, LOC100040921, Cpne4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453H15.T7 (MSMg01no453_h15.b1)MSMg01-453H15.TJ (MSMg01no453_h15.g1)
ACCAG540479AG540480
length1,353784
length of high quality
(start - end)		---600 (77 - 676)
definitionCHROMAT_FILE: MSMg01no453_h15.b1 PHD_FILE: MSMg01no453_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:22 2005CHROMAT_FILE: MSMg01no453_h15.g1 PHD_FILE: MSMg01no453_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCGTTGAGAACATGGGTGCGAGGTAAGTGTAGCCCTGGTACGCATTCGA
TGTATAGCGAAACAGTGATCCGGCGCGCAGCACGTATACGATACGCCGAC
TAAATCTTTCCACCGCCGTCGCTCGCGCCGTGTGGGTTATGTGTGGCGAT
CACATAACACCGTGCGAGCATATCACAGCCAGCTGCAGTGTCACGCCAGA
CCCCGCCCGTCTGTAGCGGCACGAAGGTGGCTCGNCACTCGATACACGCT
ACTATGTCCCATCGATAGTAGTGTATCTATACGCACTGCCTTACTGGCCT
CGCGGTCGACACTTTCGTGTTCGTCCGTGCTGCATCGGCCGTCAGCACGC
TCGATCGCGATTATGTAGACGGCGATAGTCCGTTGTCTNATGCGGCAGCG
GAACAACTCAGGCCCCACCGTCATATACATTGGTGCGGGNAGGAGGAGAA
TAGGTAGCGGAGTTGCGTTNAGTAGCAGACCTCAGATAGGCGACGTTGCA
AGAGTGCACCATGTGCACAGAGCAGGCCTGATACGTCANTGTGGTGAGGT
AGGGTCGCGCTGCAGAGTCCCTATGTTATATATTCTGAGCCGTTGCATCG
AGAGCGAGTATGTGGAGATAGAACATAAANCGGCAAGCAACATACCCAAT
GAGACAAACAGGGAGACATACTTATATGTTTCTTAGTGTGACCATTAGGT
CATTGATTTCTACACTCGAATCTTCGATGTCTTCACCTTGGCAGGTCCAC
TGGCAGCCCACCTGTTGAGCGCATCCTTTTGTTATTGGTTATGATTGGCG
CAGGCGCCACACATCTACGCTGTGTTCTATATATACGATAATCATATAGC
GCATCACGCGTACATACTAGCTTCGATGTTGACTGTATCGTGACGGAATA
GCGCGTGCCGAGCATAGTGAGCAACGACCAGTGCGAGACGATGACGACCG
CATGANTGTTTAATCTACGTCGATAGAACGATCACCGTGTGTGGACGACA
AGTCCGGTGAGCAGTGCCAGGCATAGTGNGATCACGTGACGCATCATCAN
TTGGTTGGAAGCGGCGTCGCGTAGGTGTACATGACCGTGGCANAGCGTGG
CACCTGCCGTTTTATATCTCTCGGCGCGCGACGACAAGAGTAATGCGGCC
TACTATATCATATAGTATATGCTGACGCGACAGGCTNTGCGGAGATGACG
CGTATTGCACTGACGTCACGTACGACAGTATCGTGAGTATAGACGATGAG
TGCTGCCGCGCGGAGGACGCACNGATGTGCAGTGCTGGGACATGACTATA
TATATCTGATCTGAATACGGGCGGACTCACGCTTCTCTCTCGTTAGATTA
TTG

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGCTGGTATAGGACCAGTGGGAG
TGCAGACACATAATATTTAGGTTAATGATGGTCTCTGACAAATATTGGAA
GAATGTAGTGACTCTGGTAATTACCTCACAACCCTAATCCCAAATGCAGC
ACCTTGCACAATTGGATAAGGCCAACGTATCTAGCCAGAGACTGTCTCAG
AGTTCAAACTCCAGGAGCAAGCTTAGCAAACAGAATGGGGACTACCACCT
ATTGTCCCAGTGATTGGATTTACTTCTATTGAATCTTACTTGTTTGTTTT
TATATGTCTTTATTTGTGGACATAGCTGCGCAAAAGTGCACAGTTATGTG
TGCACTTGTGTGTGGAGGTTAGAGGTTAACAGTGGGCATCTTTCTCAATC
ACCGTGGGATGATTTGTATATGCTTGGCCCAGGGAGTGGCACTATTAGAA
GCTGTGACCTTGTGGGTGTGGGCTTTAATACCCTCGTCCTAGCTGCCTGG
AAGCCAGTATTCTGCTAGGTGCCTTCAGATGAAGATGTAGAACTCTCAGC
TCCTCCCACACCACACCTGCCTGGATGCTGCCATGTTCCCACCTTGATGA
TAATGTACTGAACCTCTGAACTGTAAACCAGCCCCAATTAAATGTTTTCC
TAAAAGTTGCCTTGGTCATGGTGTCTGCTCATAGCAGTAAAATCTAACTA
AGAACACTGTTCACATTGTTTTTTGAGATGGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_h15.g1 MSMg01no453_h15.g1 CHROMAT_FILE:
MSMg01no453_h15.g1 PHD_FILE: MSMg01no453_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:22 2005
         (600 letters)



>mm_chr9_103868535_103869534
          Length = 1000

 Score =  986 bits (510), Expect = 0.0
 Identities = 516/518 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgctggtataggaccagtgggagtgcagacacataatatttaggttaatgatggtctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttgctggtataggaccagtgggagtgcagacacataatatttaggttaatgatggtctct 459

                                                                       
Query: 61  gacaaatattggaagaatgtagtgactctggtaattacctcacaaccctaatcccaaatg 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 458 gacaaatattggaagaatgtagtgactctggtagttacctcacaaccctaatcccaaatg 399

                                                                       
Query: 121 cagcaccttgcacaattggataaggccaacgtatctagccagagactgtctcagagttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cagcaccttgcacaattggataaggccaacgtatctagccagagactgtctcagagttca 339

                                                                       
Query: 181 aactccaggagcaagcttagcaaacagaatggggactaccacctattgtcccagtgattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aactccaggagcaagcttagcaaacagaatggggactaccacctattgtcccagtgattg 279

                                                                       
Query: 241 gatttacttctattgaatcttacttgtttgtttttatatgtctttatttgtggacatagc 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 278 gatttacttctattgaatcttacttgtttgtttttatatgtcttcatttgtggacatagc 219

                                                                       
Query: 301 tgcgcaaaagtgcacagttatgtgtgcacttgtgtgtggaggttagaggttaacagtggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tgcgcaaaagtgcacagttatgtgtgcacttgtgtgtggaggttagaggttaacagtggg 159

                                                                       
Query: 361 catctttctcaatcaccgtgggatgatttgtatatgcttggcccagggagtggcactatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 catctttctcaatcaccgtgggatgatttgtatatgcttggcccagggagtggcactatt 99

                                                                       
Query: 421 agaagctgtgaccttgtgggtgtgggctttaataccctcgtcctagctgcctggaagcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  agaagctgtgaccttgtgggtgtgggctttaataccctcgtcctagctgcctggaagcca 39

                                                 
Query: 481 gtattctgctaggtgccttcagatgaagatgtagaact 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  gtattctgctaggtgccttcagatgaagatgtagaact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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