BAC Information

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BAC

Clone NameMSMg01-453H18
Chromosome9 (Build37)
Map Location 69,049,276 - 69,049,873
singlet/doubletsinglet
Overlap geneRora
Upstream gene9530091C08Rik
Downstream geneNarg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453H18.T7 (MSMg01no453_h18.b1)MSMg01-453H18.TJ (MSMg01no453_h18.g1)
ACCAG540485AG540486
length767848
length of high quality
(start - end)
600 (46 - 645)---
definitionCHROMAT_FILE: MSMg01no453_h18.b1 PHD_FILE: MSMg01no453_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:22 2005CHROMAT_FILE: MSMg01no453_h18.g1 PHD_FILE: MSMg01no453_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGATCCTCACCCTGATGTTGGGTTTTAAGACTATGAGAACTGTC
TGCCCTGGGAGAACCCCCAGGGCCAAGCACAGCCCATTTATTGTTAATGT
GATGGGTCACAGAACAGCTTAGGAGGGTGTAGCTGTAGTCCCACAGACTG
ATTCTAAACAATGAAATCATTTCCAGCCTCTATGCCAGACACTTGGCTTC
TCGAATCTAGTTGTTCTTGAAGGGAATATGTAGTTATTGTTCAGAATAAG
AACGAAGGAAGGTGAAAAATCAGGGCTGTTTATTTCTAGGGTTCCAGGTG
AAGTCCTTGTATTCACTTGGTTGTTCCCAGATGTGTGGATCATGGCATTT
GAGTCCTGTATAGAAAGCCTAAGTCTTTTCTTTTCCCCTACACTCAGCTA
AACTTGTTTTCTACTTATGAGTGGAATCTTCTGGAATGGATGTACTTGAT
ACTTGCATCTTAAGTTGTTTTCTATGAATGTTTGCCCCTGCTTTCCATGT
CTGACCCAAGCTCTGCCCCTCATTCTATGGAAGCCTCAAGGTTAAAGGAC
CTGCTAACAGAGAGCAGTAAGAGGCATGAACCTTTGCATTTTGGTTATGT
CCCATTGTCATCAAGCTTTATGTCTGGGATGGCTAATAGCTCTAGCAAAT
GAACCTCTCAGTGATTTTATGATCATAAACAAAAGGTTTTTTTTTTTCTG
AATTATTTATCAGGAGC
CACTACTATGTGTATGCTTGGTGGCCGCCCGTTTTTCCAACATTAGGTGA
CCTATANAAGGATTCTCGTAATTCTTTTTCCTTCCTTCCTAACAAATGGT
CCATXXXXXXXXXXXXXXXXXXXXXCTACCTAGGAGAGAGTGGTGACCTG
GAATTCCTTTAGATCCACTGTCCCCTCACATCTGAGTGGCACCGCTTTCC
GCGGGGGAGACTTAGATGGAAGAGAACCCAGCACACCAGGAGACTGAAAG
CCACATTACATAAAGAGAAAGCCAGTTTAGAGAGAGGCCTCCTCCCCTCT
TGGAATATCAAAAAAGTATTTTTAACACTTTAAAAGTGAAAAATGATGGT
CTTTTGGTTGGACCCAGATTATGAGACATAGAAAAGTTCCTCATCTTCAA
CCCCTACTTTACTTATCCTGCCCCCCTGAAGGGCTCCTGACAACCCTTCA
AAAATTGCTCAAGGTAATCCAATTGGGTCATAAACACTTGATGAAAGCCT
TATTAGTTGGGGGTGGTGCCATATCCCCTTTGGGGGGTTATTTGTATTTT
CCAAAAAATTCCCTGAAAAGCTTTTGAACCGGGTATTCAGAGCTCTCCTC
TTACTTACTTTTGGTTTACCTCTATTTGTATCGGGTTCTACTTTTTACCC
GCTCTGGTTATCCTGGATTGGCAAATTCCCCCCTGTGTGGCGTTCTTCTC
CACTTCCTTGTAATGTTTTTGGGTATTGGTACACTGACTATTTCTCCGTG
GGATTTTTGGTGTTCTTTATTGGGGGTACCGCTTTCTTTGGGTTACCTTC
TTTAATATATCCTTTGTTCAGAACGCATTAGAACTTCCGCAACCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_h18.b1 MSMg01no453_h18.b1 CHROMAT_FILE:
MSMg01no453_h18.b1 PHD_FILE: MSMg01no453_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:22 2005
         (600 letters)



>mm_chr9_69049073_69050073
          Length = 1001

 Score = 1110 bits (574), Expect = 0.0
 Identities = 592/598 (98%), Gaps = 1/598 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattc-cagatcctcaccctgatgttgggttttaagactatgagaactgtctgccctg 62
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggaattcacagatcctcaccctgatgttgggttttaagactatgagaactgtctgccctg 742

                                                                       
Query: 63  ggagaacccccagggccaagcacagcccatttattgttaatgtgatgggtcacagaacag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggagaacccccagggccaagcacagcccatttattgttaatgtgatgggtcacagaacag 682

                                                                       
Query: 123 cttaggagggtgtagctgtagtcccacagactgattctaaacaatgaaatcatttccagc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttaggagggtgtagctgtagtcccacagactgattctaaacaatgaaatcatttccagc 622

                                                                       
Query: 183 ctctatgccagacacttggcttctcgaatctagttgttcttgaagggaatatgtagttat 242
           ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 ctctatgccagacacttggtttctcgaatctagttgttcttgaagggagtatgtagttat 562

                                                                       
Query: 243 tgttcagaataagaacgaaggaaggtgaaaaatcagggctgtttatttctagggttccag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttcagaataagaacgaaggaaggtgaaaaatcagggctgtttatttctagggttccag 502

                                                                       
Query: 303 gtgaagtccttgtattcacttggttgttcccagatgtgtggatcatggcatttgagtcct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgaagtccttgtattcacttggttgttcccagatgtgtggatcatggcatttgagtcct 442

                                                                       
Query: 363 gtatagaaagcctaagtcttttcttttcccctacactcagctaaacttgttttctactta 422
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 gtatagaaagcctaagtcttttcttttcccctgcactcagctaaacttgttttctactta 382

                                                                       
Query: 423 tgagtggaatcttctggaatggatgtacttgatacttgcatcttaagttgttttctatga 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtggaatcttctggaatggatgtacttgatacttgcatcttaagttgttttctatga 322

                                                                       
Query: 483 atgtttgcccctgctttccatgtctgacccaagctctgcccctcattctatggaagcctc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 atgtttgcccctgctttccatgtctgacccaagctctgcccctcattctatggaagcttc 262

                                                                     
Query: 543 aaggttaaaggacctgctaacagagagcagtaagaggcatgaacctttgcattttggt 600
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggttgaaggacctgctaacagagagcagtaagaggcatgaacctttgcattttggt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1001
Length adjustment: 10
Effective length of query: 590
Effective length of database: 991
Effective search space:   584690
Effective search space used:   584690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)