Query= MSMg01no453_l11.b1 MSMg01no453_l11.b1 CHROMAT_FILE:
MSMg01no453_l11.b1 PHD_FILE: MSMg01no453_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:41 2005
(673 letters)
>mm_chr9_45967663_45968741
Length = 1079
Score = 1191 bits (616), Expect = 0.0
Identities = 659/676 (97%), Gaps = 6/676 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaaggctactcttagccacataatgaatttgaggccagccaagactacagagta 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaggctacccttagccacataatgaatttgaggccagccaagactacagagta 263
Query: 64 ggatcctatctcaaataaactgtgtccactgtggaagatgagtaagttctggtttcattt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggatcctatctcaaataaactgtgtccactgtggaagatgagtaagttctggtttcattt 323
Query: 124 gtattatatttgctttttgagggacttcctatcaatatgtgtttagtagttgatactaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtattatatttgctttttgagggacttcctatcaatatgtgtttagtagttgatactaca 383
Query: 184 gatagcttactacataagctgtctatgtgtccgtgctagtctagtgctagccctggtgaa 243
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 384 gatagcttactacataagctgtctatgtgtccctgctagtctagtgctagccctggtgaa 443
Query: 244 gaatgtggtccctcggtgtgagggtaggcatgtggatagctatcagaagagtcagctgta 303
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaatatggtcccttggtgtgagggtaggcatgtggatagctatcagaagagtcagctgta 503
Query: 304 attctacacttcatggttttttatgtcttttcatttttctttatctgtttctagagagaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attctacacttcatggttttttatgtcttttcatttttctttatctgtttctagagagaa 563
Query: 364 gaaaagttcactatatagttgggtttttcttcctggttgtggaatttagaaattcttgtt 423
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 564 gaaaaattcactatatagttgggtttttcttcctggttgtggaatttagaaattcatgct 623
Query: 424 aatggcagtaacaaagctgtcttccgtatactctcttcagtgagtgtttgttgtgagtga 483
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 624 aatggcagtaacaaagctgtcttccgtagactctcttcagtgagtgtttgttgtgagtga 683
Query: 484 ggctccagtatttgcaggcaaaagcaacatctggagctgaggatctgtggggtcagctgg 543
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 684 ggctccagtatttgcaggcaaaagcaacatctggagctgaggatctgccgggtcagctgg 743
Query: 544 ggtcttgtccattgtctttaaaggcttcttgttcaggtggctcagcagcaacagagc--- 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ggtcttgtccattgtctttaaaggcttcttgttcaggtggctcagcagcaacagagcggg 803
Query: 601 --agggaa-catgactcctgcccacagggatccgaggttctctggggccgcaaacattca 657
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaagggaaacgtgactcctgcccacagggatccgaggttctctggggccgcaaacattca 863
Query: 658 gagtgctggcagttag 673
||||||||||||||||
Sbjct: 864 gagtgctggcagttag 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1079
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1069
Effective search space: 708747
Effective search space used: 708747
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_l11.g1 MSMg01no453_l11.g1 CHROMAT_FILE:
MSMg01no453_l11.g1 PHD_FILE: MSMg01no453_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:41 2005
(549 letters)
>mm_chr9_46187182_46188130
Length = 949
Score = 1000 bits (517), Expect = 0.0
Identities = 541/549 (98%)
Strand = Plus / Minus
Query: 1 aacacggtgtagcactgatgcttatggccagaaacctggctgcggacactagctgtggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aacacggtgtagcactgatgcttatggccagaaacctggctgcggacactagctgtggag 609
Query: 61 gtctcgcggactggaggagagggtggcgactgcttgagctgcaggggcagtgaaagagtc 120
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 608 gtctcgcggactggaggagagggtggcgcctgctcgagctgcaggggcagtgaaagagtc 549
Query: 121 cccagagagaggaaggaagggcaggaacttgggaaaagcagcaaattggcaatggctctg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 548 cccagagagaggaaggaagggcaggaacttgggaaaagcagcaaattggcaacggctctg 489
Query: 181 ccaggatacaggaagttgatcgtggtcacatgaccaacaagcttccctaacaagacggct 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cctggatacaggaagttgatcgtggtcacatgaccaacaagcttccctaacaagacggct 429
Query: 241 gcacaggggctaggggctccaagacatagagaggtgacaggaggctttcttgccaccaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gcacaggggctaggggctccaagacatagagaggtgacaggaggctttcttgccaccaag 369
Query: 301 ccagagaaaagagtttccaggggtctgcctaggtcctgggaggaggatgtagcatttcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ccagagaaaagagtttccaggggtctgcctaggtcctgggaggaggatgtagcatttcag 309
Query: 361 ctatttccaggacgggccctaatgcctgagcaaaatggggaggaaaggggtttcccagga 420
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 308 ctatttccaggaggggccctaatgcctgagcaaaatggggaggaaaggggttccccagga 249
Query: 421 aaccatgctgtgacagcctttgatggctttacaggctgagattcgccaacagtgaggaaa 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaccatgctgtgacaacctttgatggctttacaggctgagattcgccaacagtgaggaaa 189
Query: 481 tcgaggcccagagagctccagaaacttgttccagaaaccaagactaccaaagagccaaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tcgaggcccagagagctccagaaacttgttccagaaaccaagactaccaaagagccaaat 129
Query: 541 cggaaccga 549
| |||||||
Sbjct: 128 cagaaccga 120
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
