BAC Information

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BAC

Clone NameMSMg01-453M24
Chromosome9 (Build37)
Map Location 70,127,694 - 70,128,272
singlet/doubletsinglet
Overlap geneMyo1e
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik
Downstream geneCcnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453M24.T7 (MSMg01no453_m24.b1)MSMg01-453M24.TJ (MSMg01no453_m24.g1)
ACCAG540737AG540738
length761759
length of high quality
(start - end)
607 (48 - 654)568 (78 - 645)
definitionCHROMAT_FILE: MSMg01no453_m24.b1 PHD_FILE: MSMg01no453_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:48 2005CHROMAT_FILE: MSMg01no453_m24.g1 PHD_FILE: MSMg01no453_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTATGGAGAAAAAGGAATCTGAGACAGGAGAATTTCCAAAAGT
TGGTGGGCCAGCTAGGCTGATGTTATGCTAAGAAGAATGAAGAAGAATGA
CAACAGAGACACTGTCTCACATGAGGAGGAAGACACCTGAAGTTGTCTTC
TGACTGACCTACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACTATTGTGCACATCCATCTTGCCTGCT
GCAGTGTCCACACACAGACTTGCTGTAGTCCTCTATTGGGTCAATCCCAC
CTGTTTCTGACAGTTGTGGGGAGTGCTGGTAGCTTATACGCAATGTCCCA
GAAGTCTTTTCCTTTCTGTGGAGTCTCAAATGGGAAGCAACACCCCCCCC
TTAGTTGTAAGTGGGAGTTCTGTTCATCTCTCGATTCTCTGCACTTTCCT
TCAGGAATTGCCAGCCTGGCTCTGACCCATTTCTCTCTCAACCTCTATAA
AAAGGAGGCTAGCTCCTGCCCCTCTGTTCCTCATCAAAAGTCTCGTTTGC
CCTCCTTGCCCCTTATCTAGAACAGGCTTAAACAACCCCACATATCCTGG
GTGCCGAGGACCTCAAGTTCCCATAATGTAGCTCAGGAAGCCAGGGCTCC
CTGAAGACCCTCACTCAGGGTGTAAGCTCCCAACCTGAGAGGTTGTGGGT
GGGGATTCCCT
NACCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTTGGTTATGGCTAGCCA
TGGTCAAAAGGGACCGAGATCTGTGGGAATTGTCTGCTCTCAGGGGCAGC
AAGGGCAAGATAACTTTGGTAGCTGGAACCTTTCCCAGCCCCAATTAACC
TTGTATGATGTTTGAATAAAGTAACTGCAGTGAGCTAGCCGGGGGTCAGC
CTTTTCCAAGAAGGCTGAACCCCTCTGCTTCTTCAGAAAATGGAGCCTTA
GCATCTTGGTGAGGTTCTTTCTCTACTGTAGCACCTTCGGGCATCAATCA
ATAACTAGGTTTCGTCACAAATACACCAGACCGTGGCTTTCTCTGCTGCC
TTAACAGTGCCTGGTCTCTGTTGGTCTTGTTCCTAATTTCATCCCATGCT
CACCTGAGCTCACTGCTACCCCAAACTGGCTGAAAGTGCTTCTTTGCTCC
AAATCCCCATGATTAGCTGTAAAGTTGTACTGAGCGCTTGATAGCAGCAG
AGGGTAAAAGAGGCCCATCTGTAGTCAGGACAACTTCATCCCAGCCAGCT
AAAAGTAATCCGGAAGGGAAGGCCTCTTGCAACAACTCTCAAATATAGTG
CGCCTAGAACCCAGGTATCTCTTTAGAAACAGATTCTAATTCAGTAGCTG
TGGGACGTGGGAGCAGTGGACATTGCTCACAAGGTCCCAGGTAAGAGCCA
GGAAGAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_m24.b1 MSMg01no453_m24.b1 CHROMAT_FILE:
MSMg01no453_m24.b1 PHD_FILE: MSMg01no453_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:48 2005
         (607 letters)



>mm_chr9_70127267_70128272
          Length = 1006

 Score = 1075 bits (556), Expect = 0.0
 Identities = 578/594 (97%), Gaps = 15/594 (2%)
 Strand = Plus / Minus

                                                                        
Query: 14   tggagaaaaaggaatctgagacaggagaatttccaaaagttggtgggccagctaggctga 73
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1006 tggagaaaaaggaatctgagacaggagaatttccaaaagttggtgggccagctaggttga 947

                                                                        
Query: 74   tgttatgctaagaagaatgaagaagaatgacaacagagacactgtctcacatgaggagga 133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  tgttatgctaagaagaatgaagaagaatgacaacagagacactgtctcacatgaggagga 887

                                                                        
Query: 134  agacacctgaagttgtcttctgactgacctacacacacacacacacacacacacacacac 193
            ||||||||||||||||||||||||||||||              ||||||||||||||||
Sbjct: 886  agacacctgaagttgtcttctgactgacct--------------acacacacacacacac 841

                                                                        
Query: 194  acacacacacacacacacacacacacacacacactattgtgcacatccatcttgcctgct 253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840  acacacacacacacacacacacacacacacacactattgtgcacatccatcttgcctgct 781

                                                                        
Query: 254  gcagtgtccacacacagacttgctgtagtcctctattgggtcaatcccacctgtttctga 313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780  gcagtgtccacacacagacttgctgtagtcctctattgggtcaatcccacctgtttctga 721

                                                                        
Query: 314  cagttgtggggagtgctggtagcttatacgcaatgtcccagaagtcttttcctttctgtg 373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720  cagttgtggggagtgctggtagcttatacgcaatgtcccagaagtcttttcctttctgtg 661

                                                                        
Query: 374  gagtctcaaatgggaagcaacaccccccccttagttgtaagtgggagttctgttcatctc 433
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 660  gagtctcaaatgggaagcaaca-cccccccttagttgtaagtgggagttctgttcatctc 602

                                                                        
Query: 434  tcgattctctgcactttccttcaggaattgccagcctggctctgacccatttctctctca 493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  tcgattctctgcactttccttcaggaattgccagcctggctctgacccatttctctctca 542

                                                                        
Query: 494  acctctataaaaaggaggctagctcctgcccctctgttcctcatcaaaagtctcgtttgc 553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  acctctataaaaaggaggctagctcctgcccctctgttcctcatcaaaagtctcgtttgc 482

                                                                  
Query: 554  cctccttgccccttatctagaacaggcttaaacaaccccacatatcctgggtgc 607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  cctccttgccccttatctagaacaggcttaaacaaccccacatatcctgggtgc 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1006
Length adjustment: 10
Effective length of query: 597
Effective length of database: 996
Effective search space:   594612
Effective search space used:   594612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)