BAC Information

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BAC

Clone NameMSMg01-454C20
Chromosome9 (Build37)
Map Location 3,721,793 - 3,722,261
singlet/doubletsinglet
Overlap geneGucy1a2
Upstream gene4930433N12Rik, LOC664797, Olfr369-ps1, Alkbh8, Cwf19l2, LOC384911
Downstream geneLOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454C20.T7 (MSMg01no454_c20.b1)MSMg01-454C20.TJ (MSMg01no454_c20.g1)
ACCAG541015AG541016
length757762
length of high quality
(start - end)		486 (46 - 531)461 (74 - 534)
definitionCHROMAT_FILE: MSMg01no454_c20.b1 PHD_FILE: MSMg01no454_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:17 2005CHROMAT_FILE: MSMg01no454_c20.g1 PHD_FILE: MSMg01no454_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCATCCTTCCAAGGAACTGCCAAACTGTCTTCCAAGTAGTTCTT
GTTTTCAGAAGAAATGAACAAGCATCCTCACTGCTCCAAATTCTTGTCAA
TACTTGGTGTTATTGCTGTTATGGATATTTGATCCTTCAATTGCTGTGTT
CACTTCTATTTCCATGACTTCTTATATGGAATCTTGATTTATATTTGATT
CTCTATGTATATCCTCTTTGGTGGTGTGGCTATGAATGATTTAAACTTAC
TTACTTTAATTAATTAATTAATTAAATTAATTAATTAATTAACTTATTTT
ACCCTCAAGATTTTATTCCCCTTGCACTCCACCCTCGGTCTGTTCTACAT
CCCATACCTCCTCCCTGCCACGTTTCCCGTAGGATATCCCCACTCCCCAA
ACCCATCCACCTCCACCACCAGACCTCTAAACACCCTGGAGCCTCTAGTC
TCTTGAGGGTTAGGTGCATCTTCTCTAACTGAACCCAAACCCAGCAGTTC
TCTGTGTTGGGAGCCTCATATCAGCTGGTGTATAATCCTTTGGTGGTGAA
CCAGTGTTTGAGAGACTTCGGTCCAGTTAATTGAGACTGCTGTTCCTCCT
TCACGGGTAACCTCCCCCCCCAACTTTTTCCAACTTTTTCCTATTTTAAC
CCCCCAAGGCACCAACTTTTTGTCTTTGAATGGATGCCCAAACCCTCTTA
TTGCTCN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGATCGTGGGCCCACTGTCACACTT
CTCTGGCTGTGAAATGATTTCCTTGGTCAGAAGCAATACTGTATGGAACA
CCATGACAATATATAAGGCATTCTGTGAGTCCATGGATGGTGGTTTTAGC
AGAAGCATTACATGCAGGAAAGGCAAATCCATAACCAGAATAAGTATCTA
CTCCAGTACGAACAAAATGCTCTCCTTTCCACGGAGGAAGTGGTTCAATG
TAGTCAACCTGCCACCATTTTGCTGGCTGGTCACCTAGAGGAATGATGCC
ATATCTGGGGCTCAGTGTTGGTTTCTGCTGTTGGCAGATCTGGAATTCAG
CAGCAGCTGTAGCTAGGTCAGCCTTGGTGAGTGGAAGTTCATGTTGCTGA
GCTCAAGCATAACCTCCATCTCGACCACCATGGCCACTTTGTTCATGTGC
TCATTGAGCGATGACAGGGATGGCTGGGGAGAGAGGCTGACTGTCCACAG
AATGTGTCATTTTATCCCCTTGATTATTGAACTCCCCCTCAGCTGAAGGC
ACCTTTTGGTGAAAATTTTACTTTGGCCCAAAAATCTTTCCATCCCTTGG
CCCTTTGGAGAAAACCAACCACAAAATTTCTTCCCCCAAGTCTTTTTTCC
CCAATTTCCCATTTTAATTTTTTTCACTTCCCCGAAACCCCTATTCATTT
TTATGTCTCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_c20.b1 MSMg01no454_c20.b1 CHROMAT_FILE:
MSMg01no454_c20.b1 PHD_FILE: MSMg01no454_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:17 2005
         (486 letters)



>mm_chr9_3721589_3722474
          Length = 886

 Score =  855 bits (442), Expect = 0.0
 Identities = 466/482 (96%), Gaps = 13/482 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcatccttccaaggaactgccaaactgtcttccaagtagttcttgttttcaga 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcatccttgtaaggaactgccaaactgtcttccaagtagttcttgttttcaga 264

                                                                       
Query: 65  agaaatgaacaagcatcctcactgctccaaattcttgtcaatacttggtgttattgctgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaaatgaacaagcatcctcactgctccaaattcttgtcaatacttggtgttattgctgt 324

                                                                       
Query: 125 tatggatatttgatccttcaattgctgtgttcacttctatttccatgacttcttatatgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatggatatttgatccttcaattgctgtgttcacttctatttccatgacttcttatatgg 384

                                                                       
Query: 185 aatcttgatttatatttgattctctatgtatatcctctttggtggtgtggctatgaatga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatcttgatttatatttgattctctatgtatatcctctttggtggtgtggctatgaatga 444

                                                                       
Query: 245 tttaaacttacttactttaattaattaattaattaaattaattaattaattaacttattt 304
           ||||||||||||||||||||||||||||||||||||             |||||||||||
Sbjct: 445 tttaaacttacttactttaattaattaattaattaa-------------ttaacttattt 491

                                                                       
Query: 305 taccctcaagattttattccccttgcactccaccctcggtctgttctacatcccatacct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 taccctcaagattttattccccttgcactccaccctcggtctgttctacatcccatacct 551

                                                                       
Query: 365 cctccctgccacgtttcccgtaggatatccccactccccaaacccatccacctccaccac 424
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cctccctgccacgtttcccataggatatccccactccccaaacccatccacctccaccac 611

                                                                       
Query: 425 cagacctctaaacaccctggagcctctagtctcttgagggttaggtgcatcttctctaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cagacctctaaacaccctggagcctctagtctcttgagggttaggtgcatcttctctaac 671

             
Query: 485 tg 486
           ||
Sbjct: 672 tg 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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