BAC Information

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BAC

Clone NameMSMg01-454G24
Chromosome9 (Build37)
Map Location 33,983,720 - 33,984,098
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042343
Downstream geneKirrel3, St3gal4, Dcps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454G24.T7 (MSMg01no454_g24.b1)MSMg01-454G24.TJ (MSMg01no454_g24.g1)
ACCAG541214AG541215
length783771
length of high quality
(start - end)
447 (45 - 491)379 (77 - 455)
definitionCHROMAT_FILE: MSMg01no454_g24.b1 PHD_FILE: MSMg01no454_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:37 2005CHROMAT_FILE: MSMg01no454_g24.g1 PHD_FILE: MSMg01no454_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCGATCTTTCCCACAAGCCATTGCTGTTCTATTCAGGAATTTTCCC
CCTGTGCCCATATCTTCGAGGCTTTCCCCCACTTTCTCCTCTATAAGTTT
CAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCT
AAGTACAAGGAGATAGGAATGGATCGATTCACATTCTTCTGCATGTTAAC
AACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTCTTCAACTT
GATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAGAGGTGTATGGGT
TCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTCGTCTGTCATTA
TATCAGTCCCATGCAGCTTTTATTACAATTGCTCTGTAGTAAAGTTTTAG
GTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGAGCTT
TTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATTTGGATATTGCTCCT
TCCAAATCCTTGAAGAATCGAATTTGTAATTTTGATGAAGCATGGCATTG
ATTCTGAACAATTGTTTTTGGCATAATATCCTTTTTTCCATGGGTTTTCT
CCGCCCTCCTTTGGATTATGTATCATTTTTTTTTCCCCCCTCTTTTTTTC
TCTTAATTCTTCTTTTTATATACCTCCTACAACCCCCCCCATTTTCTTTT
TTTTTACTCTTACCTTCAATACTTTTTTCCTTG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGAAGATAAGTGAGGCAGCA
GAAGTGTCTTTCTCTAATTATATTACTTTTATTTTGGCCACTTGCTTGCA
CATTTATTTTGGGTGCTAGGTGTGAATGCACAGATTGCAGGATTATCATC
TATATGGTGTAGCTTAATGATTGGAAACACTTATATATCAGACTTGGTGT
CCAACAGATTGGTATTTTAATTCCATCTCTAGTGACCTCAAACAACTCAA
TCCCACTTTTCCTCAGCTTCCTCTATTTTAAGAGATTTAAAGGATAAGTC
TTGTGTTATTGAGAGGGTTAAAGATATAACAAATGGGCAAATTTTAAAGA
CAATCTAAAACACAGATAAAGTACTCAGCANACATTGGATATACATTTAC
TATTACAGTATATGTAAACTGCATGCCCAACTTTAATGAGATTCTAGATT
TTAAAATGGCGAGGCAATGTCTAAACCCTTATAAAAAAAGGTGTATGGCG
TTGCTCACCATTATCCTTAATTTTTTGCCCCCTCCAAAATAACACAATTT
TGTGTTACATATTTTTCCTCTTATTTTTTTTTACCCCCCCCCTTCTCTAG
GTGGGGGCGCCTCCTTTTCTTTTAATTAAAACCCCGCTCTTTCTCCTACC
TTTCCCCTCCCCGGCTCTCCCACTTTATATTTTTTTTATTCTCCCCCCCC
CTTTTTTCTTTTTTCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_g24.g1 MSMg01no454_g24.g1 CHROMAT_FILE:
MSMg01no454_g24.g1 PHD_FILE: MSMg01no454_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:37 2005
         (379 letters)



>mm_chr9_33983520_33984298
          Length = 779

 Score =  727 bits (376), Expect = 0.0
 Identities = 378/379 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaggaagataagtgaggcagcagaagtgtctttctctaattatattacttttattttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccaggaagataagtgaggcagcagaagtgtctttctctaattatattacttttattttg 260

                                                                       
Query: 61  gccacttgcttgcacatttattttgggtgctaggtgtgaatgcacagattgcaggattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccacttgcttgcacatttattttgggtgctaggtgtgaatgcacagattgcaggattat 320

                                                                       
Query: 121 catctatatggtgtagcttaatgattggaaacacttatatatcagacttggtgtccaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catctatatggtgtagcttaatgattggaaacacttatatatcagacttggtgtccaaca 380

                                                                       
Query: 181 gattggtattttaattccatctctagtgacctcaaacaactcaatcccacttttcctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattggtattttaattccatctctagtgacctcaaacaactcaatcccacttttcctcag 440

                                                                       
Query: 241 cttcctctattttaagagatttaaaggataagtcttgtgttattgagagggttaaagata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcctctattttaagagatttaaaggataagtcttgtgttattgagagggttaaagata 500

                                                                       
Query: 301 taacaaatgggcaaattttaaagacaatctaaaacacagataaagtactcagcanacatt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 taacaaatgggcaaattttaaagacaatctaaaacacagataaagtactcagcaaacatt 560

                              
Query: 361 ggatatacatttactatta 379
           |||||||||||||||||||
Sbjct: 561 ggatatacatttactatta 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)