Query= MSMg01no454_n11.b1 MSMg01no454_n11.b1 CHROMAT_FILE:
MSMg01no454_n11.b1 PHD_FILE: MSMg01no454_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:10 2005
(237 letters)
>mm_chr9_107603614_107604250
Length = 637
Score = 397 bits (205), Expect = e-115
Identities = 226/233 (96%)
Strand = Plus / Plus
Query: 1 gtttggagtttgaccacatccgtatgatactctctaaatgattgaggcactcgggccccc 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 gtttggagtttgaccacatccgtatgatactctctaaatgaaggaggcactcgggccccc 260
Query: 61 tagtaatcaggaaccaggaagccatcttctaagctctagagaatgggaggggtgaaaggt 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 tagtaatcaggaaccaggaagccatcttctaagctctggagaatgggaggggtgaaaggt 320
Query: 121 gtgtgcacacatgcaggttaagcagccaagaacctactttggggtttgctgtctctttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 321 gtgtgcacacatgcaggttaagcagccaagaacctactttggggtttgctgcctcccaag 380
Query: 181 ccacagggtaaaagatgcctttaggggctcgggtgagatctctatcttggcag 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacagggtaaaagatgcctttaggggctcgggtgagatctctatcttggcag 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space: 143184
Effective search space used: 143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no454_n11.g1 MSMg01no454_n11.g1 CHROMAT_FILE:
MSMg01no454_n11.g1 PHD_FILE: MSMg01no454_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:10 2005
(242 letters)
>mm_chr9_107764499_107765139
Length = 641
Score = 445 bits (230), Expect = e-129
Identities = 239/242 (98%), Gaps = 1/242 (0%)
Strand = Plus / Minus
Query: 1 tctgagttagatgaaatagaaacaaggattttgtttcagttctttagacacccctccctt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 555 tctgagttagatgaaatagaaacaaggattttgtttcagttctttagatacccctccctt 496
Query: 61 ccatctgacaaagtagaacaaaagaataaaatcatttgcaaatatatttgctcttttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ccatctgacaaagtagaacaaaagaataaaatcatttgcaaatatatttgctcttttctt 436
Query: 121 acaaaggagctcagaactagactgcactgtttaaagatcaaaattactgcgatattgatg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 435 acaaaggagctcagaactagactgcactgtttaaagatcaaaattactgcgatattgaag 376
Query: 181 aggaagagggcaagggaagataaaaataccatgcaatgttcttactggtttttttttttt 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 375 aggaagagggcaagggaagataaaaataccatgcaatgttcttactg-tttttttttttt 317
Query: 241 ct 242
||
Sbjct: 316 ct 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 641
Length adjustment: 9
Effective length of query: 233
Effective length of database: 632
Effective search space: 147256
Effective search space used: 147256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
