BAC Information

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BAC

Clone NameMSMg01-456G04
Chromosome9 (Build37)
Map Location 73,402,702 - 73,561,872
singlet/doubletdoublet
Overlap geneUnc13c
Upstream geneRfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
Downstream geneWdr72, Nr1h2-ps, LOC100040764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456G04.T7 (MSMg01no456_g04.b1)MSMg01-456G04.TJ (MSMg01no456_g04.g1)
ACCAG542700AG542701
length773862
length of high quality
(start - end)
403 (41 - 443)110 (126 - 235)
definitionCHROMAT_FILE: MSMg01no456_g04.b1 PHD_FILE: MSMg01no456_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:11 2005CHROMAT_FILE: MSMg01no456_g04.g1 PHD_FILE: MSMg01no456_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,402,702 - 73,403,099)(73,561,772 - 73,561,872)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATAGAGGATCCGCGGAAT
TCCCCTTTATCCACTTATGTAACATTCGTGGAGTATCCAAACCACTATAT
CATGACTCCCTGCAAAGAAATTAAAGTTCTGATAATTTAATTTTCTTTTT
CATATACTTATGCAAATTAAATTGCTAATCAAAGGAAGATTTGTAAGTGA
CTTCCAAGAGCTGCAACAATATGCTCATGTTAGGAAATCAATACAAAGAA
GTTGCAATAGACACACGTGGAGTTATAGTCAAAAGAGGCAAACTAGTATA
GGCTACAACATTTTTATTTTGAGTTATTCTACCTATTACAAAATAACCAG
ACTATCATTCTCTAGTGAATAGCATTCCCATGATGCTTTTATTGTGGTAC
ACGAGGGTGCCACATGGCATGGTATAGTGATGGTGGGGTAAATGGCTAAC
TTTCGTCCCATAGCTAGATTATAATATACGCTGTATATTTCTTATTATTC
ATTACAGTGTTTCCCTTTAGTTTTACTGTCAATGCTTCTTTTTGCATCCT
CTCGCCGATTCTGTTTTGTTCTCTTCTTAAAACAATCCAACTTTAATACT
CCTATTTCTTTCCTTTTCTTTTCCCCTCTACCTATTCACCCCTTCTTTTT
CTTTTTGACCCCCTTCTCCTCCCTTTTTTATACAATCACCCCTTTTCCCT
CATTCTCTATCTTTTTATTTCTCCTCTTTTTACATAACCTTGTTTTCATT
AATATGTCCACCCCTTCTCTCCG
TTCCGATGATATGCTTAGGCGGGNGGNCGCCTGTCTCAACAATTTAGGTG
AACTATAGAAGTTTTCGCGAAATTCGGCTGTAAGTTGAGACTCTAATTAC
TTGCTGAAAGGCAGCCTCATAATGGCTCTAACAAACAGCACATTCCTAGC
TGAAGATTTCTCTCTGTCCCTGCCCTCCTGCACCACTCTGAGTTAAAGTG
AGATTGCTTACAATTTCTGGAAGACATTTTAGAGCGCAGTCTCCATAGCT
GATTAGGATGAATAATATATCAAGAATATTCATTAATTATTCCAGCTATA
TTTTGATATAATGTATTTCTTTTTTACTTCAATGCATATAAAGAGAGATA
TGCTTTGATTCTTGTCTGCGCGACCCCGACAATGATATGTTAAAATTTGC
CTATTTTATTCGTTTCTTTCCCGTACCTCCCTACTTTTGTATAGTTCCAT
CCATCTTACATTACTTTTACGCTCCCCTCTTTACTTACTTTATCCTTCTT
TATTTTCGTCCATTCCCTCTTCTCTCTTTTTCACTCCCCTTTTCTATTCT
TTCTCCTTTTCCTATTATTTTCACCATTCTCCTCTTATCTCTTTTTTTTT
TTCCCCCTATTTTCTTTCTCCTTACTTTCCCTATCTTTCTCCTCTCTTCT
TTTCCTCATCCCTTTTTTTCTTTTCTTTTCCCCTCCCTTCCTTTTTCCCC
AACATCTTTTACATCCTATCCTTTACACTCTCCTTTGTCTCTTCCTTCAT
TCCCTTTTCCCCGTCCTCTTCTTTTTCCCTCTCTTCCCCTCTTCTCTTTC
ACACTTCTTTATCCCCTTCACCTCTTATCTTATTCATTCCTTCATTTTTC
TCTCTTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_g04.b1 MSMg01no456_g04.b1 CHROMAT_FILE:
MSMg01no456_g04.b1 PHD_FILE: MSMg01no456_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:11 2005
         (403 letters)



>mm_chr9_73402497_73403299
          Length = 803

 Score =  716 bits (370), Expect = 0.0
 Identities = 391/398 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcccctttatccacttatgtaacattcgtggagtatccaaaccactatatcatga 65
           |||||||||||  ||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 206 ggaattcccctaaatcaacttatgtaacattcgtggagtatccaaaccgctatatcatga 265

                                                                       
Query: 66  ctccctgcaaagaaattaaagttctgataatttaattttctttttcatatacttatgcaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctccctgcaaagaaattaaagttctgataatttaattttctttttcatatacttatgcaa 325

                                                                       
Query: 126 attaaattgctaatcaaaggaagatttgtaagtgacttccaagagctgcaacaatatgct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 attaaattgctaatcaaaggaagatttgtaagtgacttccaagagctgcaacaatatgct 385

                                                                       
Query: 186 catgttaggaaatcaatacaaagaagttgcaatagacacacgtggagttatagtcaaaag 245
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 386 catgttaggaaatcaatacaaagaagttgcaatagacacacatggagttatagtcaaaag 445

                                                                       
Query: 246 aggcaaactagtataggctacaacatttttattttgagttattctacctattacaaaata 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aggcaaactagtataggctacaacatttttattttgagttattctacctattacaaaata 505

                                                                       
Query: 306 accagactatcattctctagtgaatagcattcccatgatgcttttattgtggtacacgag 365
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 accggactatcattctctagtgaatagcattcccatgatgcttttattgtggtacacgag 565

                                                 
Query: 366 ggtgccacatggcatggtatagtgatggtggggtaaat 403
           ||||||||||| ||||||||||||||||||||||||||
Sbjct: 566 ggtgccacatgacatggtatagtgatggtggggtaaat 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no456_g04.g1 MSMg01no456_g04.g1 CHROMAT_FILE:
MSMg01no456_g04.g1 PHD_FILE: MSMg01no456_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:11 2005
         (110 letters)



>mm_chr9_73561564_73562073
          Length = 510

 Score =  165 bits (85), Expect = 1e-45
 Identities = 97/101 (96%)
 Strand = Plus / Minus

                                                                       
Query: 9   aacagcacattcctagctgaagatttctctctgtccctgccctcctgcaccactctgagt 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 309 aacagcacattcctagctgaagatttctctctgtccctgccctcctgcaccaccctgagt 250

                                                    
Query: 69  taaagtgagattgcttacaatttctggaagacattttagag 109
           ||||||||||||||||||||| ||| ||||| |||||||||
Sbjct: 249 taaagtgagattgcttacaatctctagaagagattttagag 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 510
Length adjustment: 8
Effective length of query: 102
Effective length of database: 502
Effective search space:    51204
Effective search space used:    51204
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)