BAC Information

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BAC

Clone NameMSMg01-456O13
Chromosome9 (Build37)
Map Location 82,780,019 - 82,780,263
singlet/doubletsinglet
Overlap genePhip
Upstream gene4930486G11Rik, LOC100039085, Irak1bp1
Downstream geneLOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456O13.T7 (MSMg01no456_o13.b1)MSMg01-456O13.TJ (MSMg01no456_o13.g1)
ACCAG543100AG543101
length754750
length of high quality
(start - end)
238 (74 - 311)247 (72 - 318)
definitionCHROMAT_FILE: MSMg01no456_o13.b1 PHD_FILE: MSMg01no456_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:53 2005CHROMAT_FILE: MSMg01no456_o13.g1 PHD_FILE: MSMg01no456_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXAATGCAAATAGGATCCGNGGA
ANNCNTCATTACCTACAGAGCTACTAAGAGCTGGCTCCTTGAGCTCATCT
AGTGATGAGTATATTGCTCCTTCTCCTAGAGACCTCCGCTAATTGATCTT
TTTTCTTTTCTTTTTCCTTCTCCTTCCTTCTAATCTCTCCCCAGGTATTC
TTACCTGACCTAAACTTTTCCTCGGGTTCAAGACCCGTGGAAAGGTTTGT
ATACTTATTTTGTGTACCATATTTCCTCTTTGCTCCTACTCTCTCTCCCC
GCTTTACTTCNGATAANTGCCCTGAATTTCATCCAGAATTTTCAGCCCTG
CCTTATCCGCTTGATAACATGTGAAAAGGAACAAAAGGGCTCCTAACACT
AGAAAAAGTTCAAGGCCAAACATACCTTGTAAAGCTATTTCCCACTTTAC
TTCTGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGACCAGACTTAC
CTTGTAAAGCTATACTTACGGGTACCCTGTTCCCCAGCTGAAGAGTTCTG
AATTCACGCAGTTGAATCCTTTCTCACAGACTGTGTTGTGTGAAACCTTT
TATTACCACCGTTCCCCCAGCTGAGGAAGTCTGAATTTTTTTTTTTTTAA
TCCCTTCTCACAGGCTTGGGTTTACGGGAAATCTTCTTTTAACCTGGACC
CGCAGTTCCTGGGTTCTGGATTTGAGACCCCTCCCCTTCGGTACGGTTAA
TGAN
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCGCGAAATTCATTCATAATCCATCAACACTGAAGG
GAACTCTTGAGAAATGCTGAGTACATGGGCCTACTCCAACTCCATATTTT
AACTTGACTCCTACGGATTCATGTCTATCCATGTATAGACAAAACTGAGA
AACACCCATAGACTTTTAGTAACTTGATAAAAAAAAATTGTTAGTGTTCT
TTTTTTAATGGCAACATCAAATGGTTCTAACCTGTAAAACCTGTTCTCCA
GTCTTTGTTTAATTGTTCNCTGATCCGTTGGATAGGCCACCACAGTGCAA
TACATGGGATAAGCTTGAAGGTCCACAGGGGCAACAAATGCAGACGCAAT
ATCTAAAATAAATAAGGTTATAAATCTATTTTCTGTATTTTAAGATTCAC
TGGTACATTAGGATGAAGAAATTACAGATATATTATAAATTTATCAACAC
ACACAAAAAAAAATAGAGCAAAACCAAGAATGTAAGTTAAGATCATTGTA
TTTTTTTAAGCTACTTTAAACCTAAAATATTGATAAAGCTATTTAAGACA
GTATTTCTAAAGATGACTTTTACAGGTTCCATTTTATCAGACTTTGATGT
TTGTTTTACATACAGCCCAGGGGAAGTGGCTGGTCTTATAATGGCTTCCC
TCCTGATCCCTGGTCCCTCTATAACCATAATTTAGTCCTTTTACTGTTTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_o13.g1 MSMg01no456_o13.g1 CHROMAT_FILE:
MSMg01no456_o13.g1 PHD_FILE: MSMg01no456_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:54 2005
         (247 letters)



>mm_chr9_82779819_82780465
          Length = 647

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcattcataatccatcaacactgaagggaactcttgagaaatgctgagtacatgggcc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 attcattcataatccatcaacactgaagggaactcttgagaaatgcagagtacatgggcc 260

                                                                       
Query: 61  tactccaactccatattttaacttgactcctacggattcatgtctatccatgtatagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactccaactccatattttaacttgactcctacggattcatgtctatccatgtatagaca 320

                                                                       
Query: 121 aaactgagaaacacccatagacttttagtaacttgataaaaaaaaattgttagtgttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaactgagaaacacccatagacttttagtaacttgataaaaaaaaattgttagtgttctt 380

                                                                       
Query: 181 tttttaatggcaacatcaaatggttctaacctgtaaaacctgttctccagtctttgttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttaatggcaacatcaaatggttctaacctgtaaaacctgttctccagtctttgttta 440

                
Query: 241 attgt 245
           |||||
Sbjct: 441 attgt 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)