Query= MSMg01no456_p10.b1 MSMg01no456_p10.b1 CHROMAT_FILE:
MSMg01no456_p10.b1 PHD_FILE: MSMg01no456_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:58 2005
(494 letters)
>mm_chr9_73389706_73390599
Length = 894
Score = 909 bits (470), Expect = 0.0
Identities = 485/490 (98%)
Strand = Plus / Minus
Query: 5 gaattcaccttgactggagacagaagggttttcaggtaaactgtgctttggtttactcta 64
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gaattcaccaagaatggagacagaagggttttcaggtaaactgtgctttggtttactcta 538
Query: 65 gacccatgcaaaagtagaatgcctttgtccatctatactatgaacacttccttcagatgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gacccatgcaaaagtagaatgcctttgtccatctatactatgaacacttccttcagatgc 478
Query: 125 tccatctcatatccctgctactgattaagttcacagtctacatctacccaggagcctgct 184
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tccatctcacatccctgctactgattaagttcacagtctacatctacccaggagcctgct 418
Query: 185 tcttacacacgggaaacagagattcagtgtgctttgctcagtccatcccttacctcagta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tcttacacacgggaaacagagattcagtgtgctttgctcagtccatcccttacctcagta 358
Query: 245 tacaagcttgagaatcagggctaaaaaggaaattactttagaggtggttacagctagaag 304
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tacaagcttgagaatcagagctaaaaaggaaattactttagaggtggttacagctagaag 298
Query: 305 gatcattaactgccactgtggccagtcaatcatgtacacatttccaacactgcttgtatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gatcattaactgccactgtggccagtcaatcatgtacacatttccaacactgcttgtatt 238
Query: 365 ctatcatgatctcaaatatctgtgactattcacatattaaatatattttatatatgttta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ctatcatgatctcaaatatctgtgactattcacatattaaatatattttatatatgttta 178
Query: 425 ctacaaatacacacacaccacaaagatccatgccgggcctatttcctatttcttccaccc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ctacaaatacacacacaccacaaagatccatgccgggcctatttcctatttcttccaccc 118
Query: 485 ttccttgtag 494
||||||||||
Sbjct: 117 ttccttgtag 108
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no456_p10.g1 MSMg01no456_p10.g1 CHROMAT_FILE:
MSMg01no456_p10.g1 PHD_FILE: MSMg01no456_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:58 2005
(425 letters)
>mm_chr9_73350931_73351750
Length = 820
Score = 760 bits (393), Expect = 0.0
Identities = 415/425 (97%), Gaps = 5/425 (1%)
Strand = Plus / Plus
Query: 1 cacagaactatagaactgcactatagacaggagtacctagagggcactgaagatgagggt 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagaactacagaactgcactatagacaggagtacctagagggcactgaagatgagggt 260
Query: 61 ggggaagttcccctggtactcccaccagctctcatgggcaggagagtccagtttctacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggaagttcccctggtactcccaccagctctcatgggcaggagagtccagtttctacct 320
Query: 121 ctgactgcctgattcacactggcccaaaactccatctttctggaattagagtgagtcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgactgcctgattcacactggcccaaaactccatctttctggaattagagtgagtcacc 380
Query: 181 catcttggatcccaaagccagctctatttcctcccaattggtaaatgaacaatgactctt 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 381 catcttggatcccaaagccagctctatttcctcctaattggtaaatgaacaatgactcat 440
Query: 241 tttttccccctccaaaaaggatactcaattattcatcaatatattggccaactcattgag 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttttccccctccaaaaaggatactcaattattcatcaatatattggccaactcattgag 500
Query: 301 ctattttattattgaatacagaaatatagtacataagtaggtttgctttttatataacag 360
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 501 ctattttattattgaatatagaaata-----cataagtaggtttgctttttatataacag 555
Query: 361 aggtaaaaaaaggtgtttgccatttcatgttatcctgaactgcattctaaatacctacag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aggtaaaaaaaggtgtttgccatttcatgttatcctgaactgcattctaaatacctacag 615
Query: 421 gtcag 425
|||||
Sbjct: 616 gtcag 620
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 820
Length adjustment: 9
Effective length of query: 416
Effective length of database: 811
Effective search space: 337376
Effective search space used: 337376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
