BAC Information

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BAC

Clone NameMSMg01-457E06
Chromosome9 (Build37)
Map Location 79,661,912 - 79,662,160
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666456, LOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a
Downstream geneFilip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457E06.T7 (MSMg01no457_e06.b1)MSMg01-457E06.TJ (MSMg01no457_e06.g1)
ACCAG543373AG543374
length751807
length of high quality
(start - end)
463 (50 - 512)247 (82 - 328)
definitionCHROMAT_FILE: MSMg01no457_e06.b1 PHD_FILE: MSMg01no457_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:24 2005CHROMAT_FILE: MSMg01no457_e06.g1 PHD_FILE: MSMg01no457_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACAAGAGATTCCTCTTGAATGGCTGAGAAGCACTTAAAGAA
TGTTCAAAGTCCATAGTGATCAGGGAAATGCAAATCAAAATGACCCTGAG
ATTCCACCTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCACATGTT
GCTAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGC
AAACTGGTACAACCACTCTGGAAATCAATCTGGAGGTTCCTCAGAAAATT
GGAAATAGATCTACCTAAAGACCCAGCTATATAACTCTTGGGCATATACT
CAAAAGATGCCCCACCATGCAACAGGGTACATATTCCACTATTTTCATAG
CAGACTTATTTGTGATAGCCAGAAGCTGGAAACAACCCAGATGCCCCACA
ACAGAAAAATGGATACATAAAATGTGTTTCATTTGCACAATGGATACTAC
TCAGCTATTAAGAATGAGGACATCATGAGGTTTATGGGCAAATGGATGGA
ACTAGAAAATATTCTCCTGATGGAGGTAACTCAGACCCAGTGGGACATGC
TTGGTATATACTCACTAATAAATGGATTTACCCCCAAAGTTCAAATTACC
TAAGTAACTATCCCCCCAATTTGAAGCTCGAAAAGTTGGTAGGTCCCCAT
TGAGCTTCCCCCCTACTTCCCTTTGGGGTGGAAAAAAAAAATCCCCCTCT
N
NCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACATTTCCCAAATCACG
TGGGATAGCACACACTGTGGGTGTTTTAGCAAGGCAAATTGGAAAAAGAA
GATGTGTGCTTAGTTTTCAGAGTGAACCAGTGTGTCTCTTGATGAAGAAG
CACCTCCTTTCTGCACCAAATGCCTTACATCCTGCAGAACATGGATTGAA
TTGTATGTACGATGGCAGCTGTCTGCCTCCAATCATCTGCACACGTTAGG
TAAATCTGTCACCCGCTGCTCACTGGTTCTCGGTGTTTATGTTAAATACG
TGTATCTTCATATGTTATCTACATATCCAGAATTGCTTGAGTCTGGATTG
TCTAATAATAATATTTATTTTCCTAATGTGTTCTGTCTCTACCCTTGCCT
TCTTTTTTACTACTACGTATTTTTCTTTTTTTTTTTCGCTGTTATCTTTA
TGTACTGTTTTTTTCATTTTTTTATATTTAGATTTTTCTTTTTTCTTTTA
CTTCCTTTTTTTTTTCTTGTCTTCCATTTTTTTTTCTCTTTTATACGCTC
TTTTTTTTCCTTTCCCCTTTTTTCACTCCTTTATCCCCCTCCTTTCGCTT
TCTTCTTTCTTTTTTTTTTTCTTCCTCTTATTTTTCCTCCTCTCTTCTCT
ACCCATCTTTTTTTCCTTTCCCTTTTTTCCTTTCCCATTTTTTCCCTTTT
TTTACTCTTCCATCTTTTTTTTCTTTTCTCCTTTCTCCCCTTATTTTCCC
TTATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_e06.g1 MSMg01no457_e06.g1 CHROMAT_FILE:
MSMg01no457_e06.g1 PHD_FILE: MSMg01no457_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:25 2005
         (247 letters)



>mm_chr9_79661712_79662360
          Length = 649

 Score =  455 bits (235), Expect = e-132
 Identities = 245/249 (98%), Gaps = 2/249 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacatttcccaaatcacgtgggatagcacacactgtgggtgttttagcaaggcaaattg 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttacatttcccaaatcacgagggatagcacacactgtgggtgttttagcaaggcaaattg 390

                                                                       
Query: 61  gaaaaagaagatgtgtgcttagttttcagagtgaaccagtgtgtctcttgatgaagaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaaaaagaagatgtgtgcttagttttcagagtgaaccagtgtgtctcttgatgaagaagc 330

                                                                       
Query: 121 acctcctttctgcaccaaatgccttacatcctgcagaacatggattgaattgtatgtacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acctcctttctgcaccaaatgccttacatcctgcagaacatggattgaattgtatgtacg 270

                                                                       
Query: 181 atggcagctg--tctgcctccaatcatctgcacacgttaggtaaatctgtcacccgctgc 238
           ||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 269 atggcagctgtctctgcctccaatcatctgcacacgttaggtaaatctgtcacctgctgc 210

                    
Query: 239 tcactggtt 247
           |||||||||
Sbjct: 209 tcactggtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 649
Length adjustment: 9
Effective length of query: 238
Effective length of database: 640
Effective search space:   152320
Effective search space used:   152320
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)