BAC Information

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BAC

Clone NameMSMg01-457H19
Chromosome9 (Build37)
Map Location 30,297,591 - 30,297,838
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt, Snx19
Downstream geneLOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457H19.T7 (MSMg01no457_h19.b1)MSMg01-457H19.TJ (MSMg01no457_h19.g1)
ACCAG543543AG543544
length734773
length of high quality
(start - end)
425 (74 - 498)248 (78 - 325)
definitionCHROMAT_FILE: MSMg01no457_h19.b1 PHD_FILE: MSMg01no457_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:42 2005CHROMAT_FILE: MSMg01no457_h19.g1 PHD_FILE: MSMg01no457_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTTTTATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATCTGTTCACCCGTGTGGAAGTCACCATCCACACTGAT
GTGGGACCTTACATTTATATGACTTTTTGGGTGTCACCTGTGCTCCTGTT
TGTAACTCCTTATTCTATTTGGGGTAAATAACCATTTGTTCACATTTCTG
GAGAAAAAGTTAATTCAAGAGAAACACAAATGGGAACTGTTTTAAAATTT
GAAACTGAAGTCAATCATTGGTCAAAGAAATTCCTAATCCAGATATAATT
ATAGGAAAGTTCCACCTAAATTTTATTGAAAGGAAAAAATAGAAACAAAC
ATAGCCAGAGATTTTTTTTTAAAGAAAAACACATAAATGTATTAGTGACA
GTTTATTGGTACATACTTTATTCTAAAACCTTAAAATGTTTGCTATAAGA
AGGAAAGGCTATGAGAGAACTGAGATAGGCTGATTCCATGGCAGGCTTCA
CACTGGCAGTTCAGAAGACTAGGCCTAAATTTCTGTTTCCCAGAACTGGA
CAAGTCCAGACAAGTCAATTAATGGAAAAAAATCACAGGCCATGGGTTAG
CCAATCAGAAGTTGCCTCTTCATTCTAAACTGGCCCAGCACTAATTTCTA
TATTTCTTGGAATGTCCCCATAATCCCTATTTAATCTTAAAAAATCCCCC
AAAGTCCCTATTAATTTTGGCTTTCCCCCTTTTT
NNAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGCACCCTTCTCCTTTCTGCTCC
TCTCAAGGTGCTTGCAGACAGCTACTGCTTTTTAAATCAAATGGCAGAGC
TCCTCAGGGAGATAGGGACAAAGCCTTGGTTTTATTGCCCGTCACTAAAC
AACCTGTGGCACACCATGTGAGTCCCTCGGGATCACACCTATTTGGGAAG
GAGTCCCTTTCTTGACCAGTTTGTAAATCTACTTCTTCAGATGTCAACTT
TAGCCAGGTGGGGCTTTTGTTACATCTTTTATTCAGCACTGAGTGGAACA
GATCTTTTCTGGATGCAGCCATGAGACTGCTGGTAGCAGTCTGGCAGCAA
AAAGAATGAGGTCTGTTTTCATACTTATATCGAATGAAAATGAAAATTAC
ATATATGCTTTGTACACGGTATACACTGTTTACAGGACTGTGTGTTCAAA
TGCGTAACTGTCCATCTTAATTTGAGCTCACCATATTTCAGCTTCATTTG
GGAAGCCGCCATGATTTGAAACAATATATTGGGAAACTTGGGTTTTCCCC
CCGAAAGTGCTTTATTTTCCTCCCTCCAACTAGTAGTTTAATTTTTTGTG
TTTTGTCCATCCCAATATATATTTTTTTTTTTTTTTTCGTAGAGTTTAGG
CCTAGTTTCTTATTGCACTTTGTACTATCCTTGTCTTGTTCCTCTTATTT
TTTTTTCTTTTTCTTACCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_h19.g1 MSMg01no457_h19.g1 CHROMAT_FILE:
MSMg01no457_h19.g1 PHD_FILE: MSMg01no457_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:42 2005
         (248 letters)



>mm_chr9_30297391_30298038
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcacccttctcctttctgctcctctcaaggtgcttgcagacagctactgctttttaaat 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agcacccttctcctttttgctcctctcaaggtgcttgcagacagctactgctttttaaat 389

                                                                       
Query: 61  caaatggcagagctcctcagggagatagggacaaagccttggttttattgcccgtcacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caaatggcagagctcctcagggagatagggacaaagccttggttttattgcccgtcacta 329

                                                                       
Query: 121 aacaacctgtggcacaccatgtgagtccctcgggatcacacctatttgggaaggagtccc 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 328 aacaacctgtggcacaccatgtgagtccctcaggatcacacctatttgggaaggagtccc 269

                                                                       
Query: 181 tttcttgaccagtttgtaaatctacttcttcagatgtcaactttagccaggtggggcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tttcttgaccagtttgtaaatctacttcttcagatgtcaactttagccaggtggggcttt 209

                   
Query: 241 tgttacat 248
           ||||||||
Sbjct: 208 tgttacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)