BAC Information

Click to search

BAC

Clone NameMSMg01-457K14
Chromosome9 (Build37)
Map Location 74,069,647 - 74,069,879
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc13c, Wdr72
Downstream geneNr1h2-ps, LOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457K14.T7 (MSMg01no457_k14.b1)MSMg01-457K14.TJ (MSMg01no457_k14.g1)
ACCAG543675AG543676
length784910
length of high quality
(start - end)
234 (79 - 312)---
definitionCHROMAT_FILE: MSMg01no457_k14.b1 PHD_FILE: MSMg01no457_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:57 2005CHROMAT_FILE: MSMg01no457_k14.g1 PHD_FILE: MSMg01no457_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCG
GAATTCATTAGCTTTTCCAAAAATGGTGGAGTCTTTGAAAACAGAGGTAA
CTTCACTTTCTCTCATGTTTGCAAGTTTTCTTTCTCTTGCTTGATAACTC
TTGGTAAAATTCCTAGACCATAAAGAGGAAAAGTGATAGGAGTAAATATC
TCGTCTTCCTCATCTATTATGATGCTGGTTATGGGTGTGGGGCGAGCAGT
GATTTCTGGATGGTTCTCTTTGTCATCACACATCACAGAGGGTTTATTTC
TTTGGTTGGTTTGGTTTCTTCCTCCCTTCAACATAACGGNATGAAAATAT
ATCTGAATTTTTTCTCATTACATGGTTTAGAGTATACAAAGAATTCTGAA
TATACTAAACTGTACTACCGCCACGGATATTATTATTGCCATTGTTATTC
TGGAAGGTTGGTGATAATAGATCCACTCTCAATTTTTGTCGATAATTCTT
TTTATTTTTGATAATTTTTCCTTCCTCGATCTTTCTTGATTGTAAATTCA
TTTTTCTTTTTTCGTTATTTGATTATCTATATTATTTTTTGGATATACCT
ATATCCCAACATATCTCTTTGGATCATTTTTTTTTTAATTATTTTTTTTT
CCTACCCATTTTTTTTTTCTTTTCTATCCCTGCTTTCTTCTCTTTTCCCC
TAATGGACTCTACCTTTTCTTTTCCCCTTCTATCATTCCTCTCTCCGCTT
CTTGTTCTTCCTACCTTATTTTCTTCACCTTTTG
CCCCCTTCGCAGCCACGGAGCAGCCCTGGCGTGCGTCTGCCTCCXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCAATCCCGTCCTTCCATCACTG
TATGGGGCGCGACCCGTGCAGTGTTGCAGCAACACTCCGTACCTATAATT
GCCATAAATGGTTTGTAGAGGGCATGAGACGATATTTGGGCTGGCCAGCC
AATTGTAAGCCTTTGCTGTAACAGGCCGCCACACCCCTATTCGCCCTGAG
CTCGCTTGTCATAACTTAAATCGGTGCCCAGGTTCTATCTGATATTCCTT
TGCTCACCTACCTCCTCCCCCTCCTATCCTTACTAGCAACACACATGTGC
GTTTTGTTGGATGTTAGACTGAAGGTGAGGATCTCATTTCGCTCGTGGGC
CACGGAGCACTTACCTGCGCACACCGTCATCATAACACACATGGTCACTC
ATGTCTTATTCACCTATTTTATCTCTCGTATACTACAATCACTTTTTTCC
TTCTTTACCCCCGTTCGCGGTAATATCTTGATCTCCAACCGTCTTTGTTT
ATTGTCGTCCTTTGCATCGCAGCAAATTATTATCGCCGCGCTCCCCCCCA
ATACTCTTTCCCGCTCACAATTTTCTCCCGCGGGGCACCGCCCTCTGTTG
TCCCCCACACCTTCCCCACTCTCTGATCGTCCTTTTCCCCCTTCGCTCCC
CGCCATATTAACTCCCCCCCTTATCACCCACCCACTCGCCGCTATTTATC
GTCCCCCCGATTTATTTCGACGTCCGGCTGATCATAGCCCGCGGTTATTA
CTAGTGTACTGTTCTTGTCCCCGTGCCTCTATCTCTCCCATATGATATCC
CACTCCTTTTCTTGCATTCCTCTGTCTCCTTCTTAACTCACTTTGTCTAC
CCACCTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_k14.b1 MSMg01no457_k14.b1 CHROMAT_FILE:
MSMg01no457_k14.b1 PHD_FILE: MSMg01no457_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:57 2005
         (234 letters)



>mm_chr9_74069318_74069951
          Length = 634

 Score =  383 bits (198), Expect = e-111
 Identities = 225/234 (96%), Gaps = 1/234 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagtctttgaaaacagaggtaacttcactttctctcatgtttgcaagttttctttctctt 60
           |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 562 gagtctttgagaacagaggtaacttc-ctttctctcatgtttgcaagttttctttctctt 504

                                                                       
Query: 61  gcttgataactcttggtaaaattcctagaccataaagaggaaaagtgataggagtaaata 120
           |||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct: 503 gcttgataactcttggtaaaattcctagaccataaagaggaatagcgataagagtaaata 444

                                                                       
Query: 121 tctcgtcttcctcatctattatgatgctggttatgggtgtggggcgagcagtgatttctg 180
           ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||
Sbjct: 443 tctcgtcttcctcatctattatgatgctggttatgagtgtggggtgagcagtgagttctg 384

                                                                 
Query: 181 gatggttctctttgtcatcacacatcacagagggtttatttctttggttggttt 234
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggtggttctctttgtcatcacacatcacagagggtttatttctttggttggttt 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)