BAC Information

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BAC

Clone NameMSMg01-458C11
Chromosome9 (Build37)
Map Location 17,971,409 - 17,972,011
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554
Downstream geneLOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458C11.T7 (MSMg01no458_c11.b1)MSMg01-458C11.TJ (MSMg01no458_c11.g1)
ACCAG544050AG544051
length741749
length of high quality
(start - end)
611 (51 - 661)637 (76 - 712)
definitionCHROMAT_FILE: MSMg01no458_c11.b1 PHD_FILE: MSMg01no458_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:39 2005CHROMAT_FILE: MSMg01no458_c11.g1 PHD_FILE: MSMg01no458_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGAAAAATCTAAACTTGCTGTCACTATACGACTCACTATATTCAGAGGAT
CCGCGGAATTCTCTCAGGATCCCATTTTTTTTTTTTTTTGCTTTGCTTTG
CTATTGATTTTTGAAGAACTATAGAGTTTTCTGATGAGATCTTACTAATT
TGATGATTCATATGCCAATACATTCCTTTTCCCCTTTACTACTTATAAAC
TTGTATTGATAAGCAAAGACTTGACCATATTTTAATTTTTGAATTGCCTT
CTTCCCTCAGAGGAGAGTCATCTCTCTTTGTGTTATAATAGAAGTCATCA
ATGACCAGTGAATAGACATACCGAATACTTTTAACCCGTGTGAATCTAAT
TCTGTCATACATTTACTAGCTGGAGTAAATTATAAAGATAAAAGTTTCAT
TAGCGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAAT
GGAGGAACTAGTGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTAT
AGATGGAACAACAACATGAATTAACCAGTATCCCCGGAGCTCGTGTCTCT
AGCTGCATATGTATCAGAAGATGGTCTAGTCGGCCATCAGTGGAAAGAGA
GGCCCATTGGTCTTGCAAACTTTATATACCTCACTCAGTACAGGGGAATG
CCAGGGCCAAGAAGTGGTAGTGAGGGNATAGGGNNAGGNNAGNNNNTNTN
NNNTNTNTNTTTTTTTTTNTTTTTTTTTTTTTTTTTNNTTT
CGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAACGTTGCACAATCACAGAAAATTA
TCTGCAGCTGGCAAAATTGTGCTCTGCTAAATAAAGTGTGAGGCAAATCA
AATTAGCCTCTGTGGACAATCTGAAGCAGGCCAATATCCCCCACCTGGGA
TTAAAATGAAAACATACTTCTATAATATTTGTCATTTTTTAAAAAAAGGA
ACCAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCAACTGCTCTGCT
CTTCTGAAGGACCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAT
CTACCTGTAATGGGATCTGATGCCCTCTTCTGGTGTACTTATGTACAAAA
GTAAATAAATCTTTGGGCCGAAGTGAGCAGGGACCATCAGAGCGAGCAGA
GCAGAGGTCCTAAATTCAATTCCCAACTACCACATGAAAGCTCACAACCA
TCTGTACAGCTACTCATATACATTAAATAAGTAAAAATTTTTTTTTTTGG
TTTTTCGAAATAAATAAATCTTAAAAAAAAAAAAAAAAAAAAAAGAACCT
TGTCTGGAGAGAAAGGGGCAGGGGGAGGGTTAGAGGGACCATGAGACATA
CAGAGAGATACACATACNTAATACATGCATATATATATATATATATATAT
ATATATATACTGTTGGGTTAGGAGGATATGAACCAATGGTTGTCAAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_c11.b1 MSMg01no458_c11.b1 CHROMAT_FILE:
MSMg01no458_c11.b1 PHD_FILE: MSMg01no458_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:39 2005
         (611 letters)



>mm_chr9_17971204_17972215
          Length = 1012

 Score = 1046 bits (541), Expect = 0.0
 Identities = 590/609 (96%), Gaps = 9/609 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctctcaggatcc--catttttttttttttttgctttgctttgctattgatttttg 63
           |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctctcagga-ccagcatttttttttttttttgctttgctttgctattgatttttg 264

                                                                       
Query: 64  aagaactatagagttttctgatgagatcttactaatttgatgattcatatgccaatacat 123
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagaactatagagttttctgatgggatcttactaatttgatgattcatatgccaatacat 324

                                                                       
Query: 124 tccttttcccctttactacttataaacttgtattgataagcaaagacttgaccatatttt 183
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 tccttttcccctttactacttataagcttgtattgataagcaaagacttgaccatatttt 384

                                                                       
Query: 184 aatttttgaattgccttcttccctcagaggagagtcatctctctttgtgttataatagaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatttttgaattgccttcttccctcagaggagagtcatctctctttgtgttataatagaa 444

                                                                       
Query: 244 gtcatcaatgaccagtgaatagacataccgaatacttttaacccgtgtgaatctaattct 303
           ||||||||||||||||||||||||||||||||||||   ||||| |||||||||||||||
Sbjct: 445 gtcatcaatgaccagtgaatagacataccgaatactaaaaacccatgtgaatctaattct 504

                                                                       
Query: 304 gtcatacatttactagctggagtaaattataaagataaaagtttcattagcgtggatgct 363
           ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 gtcatacatttgctagctggagtaaattataaagataaaagtttcattagcatggatgct 564

                                                                       
Query: 364 cacagtcagctattggatggatcacagggcccccaatggaggaactagtgaaagtaccca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cacagtcagctattggatggatcacagggcccccaatggaggaactagtgaaagtaccca 624

                                                                       
Query: 424 aggagctaaagggatctgcaaccctatagatggaacaacaacatgaattaaccagtatcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 625 aggagctaaagggatctgcaaccctatagatggaacaacaacatgaactaaccagta-cc 683

                                                                       
Query: 484 cc-ggagctcgtgtctctagctgcatatgtatcagaagatggtctagtcggccatcagtg 542
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctggagctcgtgtctctagctgcatatgtatcagaagatggtctagtcggccatcagtg 743

                                                                       
Query: 543 gaaagagaggcccattggtcttgcaaactttatatacctcactcagtacaggggaatgcc 602
           ||||||||||||| |||||||||||||||||||||||||||    |||||||||||||||
Sbjct: 744 gaaagagaggcccgttggtcttgcaaactttatatacctca----gtacaggggaatgcc 799

                    
Query: 603 agggccaag 611
           |||||||||
Sbjct: 800 agggccaag 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1012
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1002
Effective search space:   602202
Effective search space used:   602202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)