BAC Information

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BAC

Clone NameMSMg01-458G16
Chromosome9 (Build37)
Map Location 12,359,807 - 12,360,390
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039989, LOC622505
Downstream geneLOC100039680, LOC665285, LOC100039729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458G16.T7 (MSMg01no458_g16.b1)MSMg01-458G16.TJ (MSMg01no458_g16.g1)
ACCAG544252AG544253
length742756
length of high quality
(start - end)
588 (81 - 668)608 (74 - 681)
definitionCHROMAT_FILE: MSMg01no458_g16.b1 PHD_FILE: MSMg01no458_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:00 2005CHROMAT_FILE: MSMg01no458_g16.g1 PHD_FILE: MSMg01no458_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATGGGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGG
ATCCGCGGAATTCTCTATCATCCCTAGATGGTAAATACCATCAAATACAA
CCATATCTTAAGGGCAGCTACTGAACCTGCTAAGTGAGGAGAGTGATTAC
AGTCTTCCAAGGCACTCCTGAGTATACTTAGTATGTACTTTAAGAAACAC
ATTCTGCCTGCAACCTACCCTAAACATCCATGATGAAGAAATACAAATGG
CAAAACAGGTAGGGAGAAGTCCTATGTATCATTGTGTCAAGACAAATGGA
GGCCCTATTTATCATTTGGATTACTTACTTATTCTTGGTAATGGCCATGA
CCATCATAGGTGTAGAAGCTAAAATCTGATTAAGTGTTAAAAGGTGATAG
CAAATTCTCAGAGAATTATACCTAGACACCATCAGTGAACAGTATTCTGC
AAGATTTCTGAGAACTCTTTGTTTTCACTGTGTTTTAGTGAAATAAGTGG
TAAAGGATGTCCTGGTGGCAGAATCTGACCTCCTACAAGCCAGGCTTGGC
TGACCCCCATAGTCAACTCAGTGTCATCTCTCTCTGTCTCTTTAAATTCT
TCCAGTATTTGGTTAACTGTTCTATGTGTGAGCCCATGGTAACAAATTTA
CTGTATTATTATGTGGGTTCTTGTCTTTTTCAAATATTTGTATATGTTCA
TTGGCAGTTTCACACTTGTAAATCATATAATTTGATCATATT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCAAGAAATTCTCACCTGAGGAATACTGAATGTCTGAG
AAGCACCTGACAAACATTCTTTAGAGATGCAGAGATCTCTTAGGAAAACA
AATGTAAATATCAAGTCTATACATTTTTGAAGTTTCACTGATAGAGGAGA
TATTTCTTTTTTTTTTCTTTAAATATTTTTATTACGTATTTTTCTCAATT
GCATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCACTCCCC
TACCCACCCATTCCCACTTTTTTGCTCTGGTGTTCCCCTGTACTGGGACA
TATAAAGTTTGCAAGTCAAATTGGCTTGTCATATTTCAATAAGTTAATTT
TGGGTACTTTAATTCAAAAAAAAATATATGGGTGGGAAAAATGGCTCAGA
GGATACAATGTGAACATGAAGTCCTGAGTTCAAATTATCAAACCCATGTA
GAAAGATATGTGAGATATCACACACCTAGAATTCCAGTGCTATTGTAGGA
AGTAACTGGAAGGTGCCAAAGATTTGGTGACTTCTATGGTAGCCCAAGTG
CCAGAAACTCCAAGTTCACAAAAGAGCCTGCTTCAGAGAAATAAGGAAAA
GAATGATAGAGTATAACACTTGATGTGTTCTCTGACCTCCATATGTATGT
GCAGGTGTGCCCATTCACACTCACTTGTGTTCATATATGATATCTACTTG
TGCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_g16.b1 MSMg01no458_g16.b1 CHROMAT_FILE:
MSMg01no458_g16.b1 PHD_FILE: MSMg01no458_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:00 2005
         (588 letters)



>mm_chr9_12359607_12360590
          Length = 984

 Score =  978 bits (506), Expect = 0.0
 Identities = 566/588 (96%), Gaps = 4/588 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaaataccatcaaatacaaccatatcttaagggcagctactgaacctgctaagtgagga 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaaataccatgaaatacaaccatatcttaagggcagctactgaacctgctaagtgagga 260

                                                                       
Query: 61  gagtgattacagtcttccaaggcactcctgagtatacttagtatgtactttaagaaacac 120
           |||||| |    |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtgact----tctttcaaggcactcctgagtatacttagtatgtactttaagaaacac 316

                                                                       
Query: 121 attctgcctgcaacctaccctaaacatccatgatgaagaaatacaaatggcaaaacaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 attctgcctgcaacctaccctaaacatccatgatgaagaaatacaaatggcaaaacaggt 376

                                                                       
Query: 181 agggagaagtcctatgtatcattgtgtcaagacaaatggaggccctatttatcatttgga 240
           ||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||||||
Sbjct: 377 agggagaagtcctatgtatcattatgtcaagacaaatagagaccctacttatcatttgga 436

                                                                       
Query: 241 ttacttacttattcttggtaatggccatgaccatcataggtgtagaagctaaaatctgat 300
           ||||||||  | |||||||  ||||||||| |||||||||||||||||||||||||||||
Sbjct: 437 ttacttacagaatcttggtggtggccatgatcatcataggtgtagaagctaaaatctgat 496

                                                                       
Query: 301 taagtgttaaaaggtgatagcaaattctcagagaattatacctagacaccatcagtgaac 360
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 497 taagtataaaaaggtgatagcaaattctcagagaattatacctagacaccatctgtgaac 556

                                                                       
Query: 361 agtattctgcaagatttctgagaactctttgttttcactgtgttttagtgaaataagtgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agtattctgcaagatttctgagaactctttgttttcactgtgttttagtgaaataagtgg 616

                                                                       
Query: 421 taaaggatgtcctggtggcagaatctgacctcctacaagccaggcttggctgacccccat 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 617 taaaggatgtcctggtggcagaatctgacctcctacaagccagccttggctgacccccat 676

                                                                       
Query: 481 agtcaactcagtgtcatctctctctgtctctttaaattcttccagtatttggttaactgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 agtcaactcagtgtcatctctctctgtctctttaaattcttccagtatttggttaactgt 736

                                                           
Query: 541 tctatgtgtgagcccatggtaacaaatttactgtattattatgtgggt 588
           ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 737 tctatgtgtgagcccgtggtaacaaatttactgtattattatgtgggt 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 984
Length adjustment: 10
Effective length of query: 578
Effective length of database: 974
Effective search space:   562972
Effective search space used:   562972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)