BAC Information

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BAC

Clone NameMSMg01-458M05
Chromosome9 (Build37)
Map Location 112,088,402 - 112,088,644
singlet/doubletsinglet
Overlap geneArpp21
Upstream geneLrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac, 4930545L08Rik
Downstream geneLOC100039341, LOC620760, LOC100043800, EG622110, LOC100039391, LOC100043801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458M05.T7 (MSMg01no458_m05.b1)MSMg01-458M05.TJ (MSMg01no458_m05.g1)
ACCAG544516AG544517
length749757
length of high quality
(start - end)
242 (77 - 318)169 (129 - 297)
definitionCHROMAT_FILE: MSMg01no458_m05.b1 PHD_FILE: MSMg01no458_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:27 2005CHROMAT_FILE: MSMg01no458_m05.g1 PHD_FILE: MSMg01no458_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGATCTATATTTGCGGCCGCTAATAGATCACTNATCATAAACCAGGGCG
GNAATCAACCCATACCGACAAGCCCAGCATCCCTACCGAGACGTGACACA
CTCCAGAGGACAGAGCAAGACAATACTGAGCAGCAAATGCACACACAGGA
GGCAGGTGCGTCACCTCAGCCTTAGCCCATCCATGCACACATCAGCACAT
GTGCGTACACCTTCTGTCAAAATGAGTCAACTCCTCTTAGCCGAGACACT
GATCTCCCACCCATGTTAGGACCCACATCCCGCTACAGAGAGAAGAAAAT
GGTGACAGTCCCCCAGTGCTTCTTATTTGACCCCCCCCCCCAACATCCAA
GGTCCTATCGATAGGCAGGCAGCACCTCAGATATAATTCAGAAAATGATT
TTTAAGTTGCAACCATGGAAACACCTCCCCAGCACCCAGCAACATGGAAT
ACTCTGCACTGTGTTCAGGGACAAAACTCAGATGGAAAGGTTATGATTTG
GTATAAACACGGGATCTATGTCTGGCCATGGCAGCAGCAGCATCAGCAGC
CCATAGCTTTCTGTTCCTGCCCAGTATCTGAGCTGCATCAGTGCTGCAAG
CTCTGTAGAGGTATCCGCCTATTGTTTACAATCGAATCTGATACAGCCCC
CTGACACTCTTAGTTAATTGTTCAACAGACGGGAATTGTCTTTTTAAAAC
TCCATTTCTGTTAATTGTTCTGGTCCCACCCCCATCCCCTATTTATCTT
GGCGGAGATGAGGGGTGAGGCGGGAGAGCGGCGGGTTTCAAAACAGGAGG
GGGAACTATAGAATGTTGCGCGAAAATCTAGAAGGNCTTTCATTTCTTTC
TTTATTTCTTCCATGACCTAGTTACCATTGAGTAGAAACTTGTTCAGTTT
CCATGAGTATGTGGGCTTTCTATTGTTTCCATTATTAATCTCTAACCTTA
GTCCATGGTGATCTGACAGGATGCATAGGATTATTTCAAACTTCTTGTAT
CTGTTGTTTCTTGATTTTTGTTTGATTATACGGCCAATTTTTCAGAAGGT
ACCATGAGGTGCTGAAGAGTTTTGTTTACTCTTTTGCTTTAGGGTGAAAT
GCTCTGTATATATTTGATAACTCCCTTTGCTTCATAACTTATATTACTTT
CACAGTGCCTCTGTTCAGCTTTTGTTTCAATGACCTGCCCATCGGTGAGA
ATAATGTCTTGATTGTTCTCCACTATTATTGTGTGAGGATCCGTGTGTGC
TTTGAGCTCTTATTATCGTCTCTTCTCTATATGCCGCTATCCTCGCTTAT
GACGCCTACCTGTCTAGAATTGATACTCCCTCTTGGTGGATTTTCCCTCT
GACGACTACTACGTGTACCCCCTTCATCCTTTCGACCTTCTTTTGCCTGC
TACATACTCTTTTCTTTTTCCTCCCAATGCCTCCCCATCCCCCTATCATT
GACCTCATTTCTCCCTTTTTCTTCCCTTTCCCTTCCTTTCTTTCTCCTTC
CCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_m05.b1 MSMg01no458_m05.b1 CHROMAT_FILE:
MSMg01no458_m05.b1 PHD_FILE: MSMg01no458_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:27 2005
         (242 letters)



>mm_chr9_112088202_112088844
          Length = 643

 Score =  424 bits (219), Expect = e-123
 Identities = 237/243 (97%), Gaps = 1/243 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatccctaccga-gacgtgacacactccagaggacagagcaagacaatactgagcagca 59
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcatccctaccgacgacgcgacacactccagaggacagagcaagacaatactgagcagca 260

                                                                       
Query: 60  aatgcacacacaggaggcaggtgcgtcacctcagccttagcccatccatgcacacatcag 119
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 aatgcacacacaggaggcaggtgcgtcacctcagccttagcccatccacgcacacatcag 320

                                                                       
Query: 120 cacatgtgcgtacaccttctgtcaaaatgagtcaactcctcttagccgagacactgatct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 cacatgtgcgtacaccttctgtcaaaatgagtcaactcctcttagccgagacactgagct 380

                                                                       
Query: 180 cccacccatgttaggacccacatcccgctacagagagaagaaaatggtgacagtccccca 239
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 381 cccacccatgttaggacccacatcccactacagagagaagaaaatggtgacagtccctca 440

              
Query: 240 gtg 242
           |||
Sbjct: 441 gtg 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 643
Length adjustment: 9
Effective length of query: 233
Effective length of database: 634
Effective search space:   147722
Effective search space used:   147722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)