BAC Information

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BAC

Clone NameMSMg01-460E11
Chromosome9 (Build37)
Map Location 44,756,993 - 44,757,641
singlet/doubletsinglet
Overlap geneUbe4a
Upstream geneLOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l
Downstream geneCd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460E11.T7 (MSMg01no460_e11.b1)MSMg01-460E11.TJ (MSMg01no460_e11.g1)
ACCAG545674AG545675
length6981,548
length of high quality
(start - end)
634 (65 - 698)---
definitionCHROMAT_FILE: MSMg01no460_e11.b1 PHD_FILE: MSMg01no460_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:28 2005CHROMAT_FILE: MSMg01no460_e11.g1 PHD_FILE: MSMg01no460_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCGGAA
TTCTCTTTTCACCATAGAGGGCTGGAGAGACGACCCAGCAGTTAAGAGCA
CTTTTAGCTGCCCTTCCAGAGGACCCTAGTTCAGTTCTCATCACCTACAT
GAAGGCTCACAGCTGCATGTAACTTCAGTTCCAGGGGATCCACTGCACTC
TTCTGGCCCCAAAGGCACTGCCTGCACTTGGTACATGCATGCAGGCAAAG
CACCCATCCACATAAAATAAAAGTAAATACATCTTGGGAGGCAGAGGCAG
GCAGATTTCNTAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGA
CAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAAAACAAAACA
ACACAAAAAAGTAAATAAATCTCAAAGAACCATTGTTGGGAAGTGGGTAT
CTAGTTCGCTGGTCAGCAGTAGTGGAACATTGCCTAGCATTGAGCTGAGC
AAGTCTTCAGTTCAGTCGCTGCATCACAGCAGAGACAGACAGACAGACAG
ACAGATAGCATGAAAGTGTAAATGCATAAAATCTGTCACAGCCTCCTTCC
TTTCTCATCTGTCTACTATTAGATTTTGAAGATGTAACTGAATTTTTAGA
AGAGGTCATTGAAGCCTTGCTGTTGGATGAGGAGGTTCGAACATTTCN
GGTTTTATAAACAATTACATATAGTTTCAAGCCACACCCTGTATCTCCTC
ACCTATCGGCGTGTCGGCGCGACGCCCCNCGCACGTGGAAGTTGCCAGGA
AGGATCGAATAGTAATGGACACACGAGAGATGACGGCGCGGATTGCGCTG
GTGCAGGGCCATGTGCGTAGTAACTGATATCGTTGCTGATGATGANTCCG
CCGCGCCTCGCGTGGNTCTNGCCTGGGCAGTGATACACTCTCCTCTCTTG
CGATCGAGTGTATGTCACCTAAGAGCAAGAACGCGAATGCGGATTGTATC
ACTATTTTATACCTGNNGTNNNTACTCCCGCACCTCGCCTNCGCCGTCCG
CACAACTAGCCTCTAGTCGCACCGCTCTTGTGCTGCGCTGGTTCTCCGAN
TAGTGTCTGGCCCTACTTCTTCTGCATAACTTTCANTATGCTCATAATAT
AAGTCTCCACAGTCTAACAATTAGATATCTCAGTTGTTTAGTCACCTGTA
TCCTGGNTATCCAGAATATCGCGACGCGCATGTAGATACGCGGCCAGGCG
ATTNTTGTTCAATATTAGCCTGCGCGTACATAGATGGACGATGCCTTGTA
GACGCGTCTCGGCGGTGCTGAGCCCGGATAGTGTATTACGACTGTTCTAA
TGTCGCNCTCGTTATAGATATGTTCNAACCCCTCTACGCTCGNTCGCGNG
TNTAGTAGATAGATGTCATACTANCNCGAGTACTGTATACANTCAGAGTA
GAGTCGACGCACAAGTGNACGATAGACGTCAATCGTTGCGACGCATCGCG
GAGGCAGTATCGATGATGCCGGCGAGTCGACAACTCANCGGTGTCGTTAT
CAGTATTGGTGTCGCGCAGGCAGTCGGCGCGTACTCGCGCCAGACGCGCC
GACGCATGAGTGGTAGTATCGATATAGTAGATATAGGAGCGCTTGTATNC
ACAGTCTGCGCTGCAGATACTGCGAGGCGCCTGCAGAGAGCAGCAGTAGC
TGTACGCTGCTGCGCGGTGTGGTCGGTCGCTATATGATGGGTAATCTCTG
TGNTATATCGAGTCTCGCTTGCTCGATCCTATGCTCACGCACTCCACATC
GCTCATCACTATCATTGATGTCGCGCGTGCTNGTTGCGTGTTACTATCAG
TCTCGCCATCTATACTCTATCGTGCTCTGCGCACGCTGTGTCNTTATTAN
CTGTATGATACGCGGCGACATGAGTATCGTCTGNACNCGTCGTCATCTGC
ACATGTCACCTGTGATGCTATGATATCGGACGTGCAGCAGCTTGANTNCA
GTCGTCGCACTCCTATCACTGCGCAGATGGACATCTGTACGTAGCNTCAC
TGGCGCTCATATGACCTCTGACATCANCGTACACAGCGTACGCTACTGAG
AGACGTCTAGTTCTCAGACGTCCAGCATCTCTGCGCACGCTAGTCGTATA
CACACTTTCATTTGACAGCAGAGCANCGATGTATNCAGGTACACGACACT
CNCATCTCTATCGCNCGAGCTCATTATCGCTCTCACNATCGTCCCCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_e11.b1 MSMg01no460_e11.b1 CHROMAT_FILE:
MSMg01no460_e11.b1 PHD_FILE: MSMg01no460_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:28 2005
         (634 letters)



>mm_chr9_44756646_44757679
          Length = 1034

 Score = 1152 bits (596), Expect = 0.0
 Identities = 629/650 (96%), Gaps = 18/650 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagagggctggagagacgacccagcagttaagagcacttttagctgcccttccagaggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 tagagggctggagagacgacccagcagttaagagcacttttagctgcccttccagaggac 937

                                                                       
Query: 61  cctagttcagttctcatcacctacatgaaggctcacagctgcatgtaacttcagttccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 cctagttcagttctcatcacctacatgaaggctcacagctgcatgtaacttcagttccag 877

                                                                       
Query: 121 gggatccactgcactcttctggccccaaaggcactgcctgcacttggtacatgcatgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gggatccactgcactcttctggccccaaaggcactgcctgcacttggtacatgcatgcag 817

                                                                       
Query: 181 gcaaagcacccatccacataaaataaaagtaaatacatcttgggaggcagaggcaggcag 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 816 gcaaagcacccatccacataaaataaaagtaaataaatcttgggaggcagaggcaggcag 757

                                                                       
Query: 241 atttcnt-agttcgaggccagcctggtctacagagtgagttccaggacagccagggctac 299
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 atttc-tgagttcgaggccagcctggtctacagagtgagttccaggacagccagggctac 698

                                                                       
Query: 300 acagagaaaccctgtctcgaaaaacaaaaacaaaacaacacaaaaaagtaaataaatctc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 acagagaaaccctgtctcgaaaaacaaaaacaaaacaacacaaaaaagtaaataaatctc 638

                                                                       
Query: 360 aaagaaccattgttgggaagtgggtatctagttcgctggtcagcagtagtggaacattgc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aaagaaccattgttgggaagtgggtatctagttcgctggtcagcagtagtggaacattgc 578

                                                                       
Query: 420 ctagcattgagctgagcaagtcttcagttcagtcgctgcatcacagcag----------- 468
           |||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct: 577 ctagcattgagctgagcaagtcttcagttcagtcgctgcatcacagcagagacagacaga 518

                                                                       
Query: 469 -----agacagacagacagacagacagatagcatgaaagtgtaaatgcataaaatctgtc 523
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cagacagacagacagacagacagacagatagcatgaaagtgtaaatgcataaaatctgtc 458

                                                                       
Query: 524 acagcctccttcctttctcatctgtctactattagattttgaagatgtaactgaattttt 583
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 acagcctccttcttttctcgtctgtctactattagattttgaagatgtaactgaattttt 398

                                                             
Query: 584 agaagaggtcattgaagccttgctgttggatgaggaggttcgaacatttc 633
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agaagaggtcattgaagccttgctgttggatgaggaggttcgaacatttc 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)