Query= MSMg01no460_g04.b1 MSMg01no460_g04.b1 CHROMAT_FILE:
MSMg01no460_g04.b1 PHD_FILE: MSMg01no460_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:37 2005
(591 letters)
>mm_chr9_10043103_10044095
Length = 993
Score = 990 bits (512), Expect = 0.0
Identities = 569/589 (96%), Gaps = 6/589 (1%)
Strand = Plus / Plus
Query: 7 gaattcatccattaccttactctatttttattttaagtgtatgaatttttagtatttgac 66
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcatccatgatcttactctatttttattttaagtgtatgaatttttagtatttgac 266
Query: 67 atgcatgagagcaaacattcaggaatatatcctttatgcaaaaatgcttttcaattatca 126
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atgcatgagagaaaacattcaggaatatatcctttatgcaaaaatgcttttcaattatca 326
Query: 127 aatagtaaaaaaa--caatccaatcatgacaagagagcctttgaattgaaataatgttta 184
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aataataaaaaaaaacaatccaatcatgacaagagagcctttgaattgaaataatgttta 386
Query: 185 ataataatttgtttctatttttcacatcctcttgctattaaattgcaatcactagataac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ataataatttgtttctatttttcacatcctcttgctattaaattgcaatcactagataac 446
Query: 245 ttctgcaagttctaataacaattgttcacttataactgtgtttcaaactctgtt-tcaga 303
|||||||||||||||||||| ||||||||||| |||||||||||||||||| | | |||
Sbjct: 447 ttctgcaagttctaataacagttgttcacttaggactgtgtttcaaactctgctgt-aga 505
Query: 304 agctccaatgctggtgcagaccactccatttgtttacgggaagagctgcttgcctgtgag 363
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agctccaatgctgctgcagaccactccatttgtttacgggaagagctgcttgcctgtgac 565
Query: 364 gagtgttgcagttatccccagtgaggagtttggatggtgacagtatgttctctagtgagg 423
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 566 gagtgttgcagttatccccagtgaggagtttggatggtgacggtatgttctctactgagg 625
Query: 424 gtaaggatctcacacaggaaatccataagtatagaagaagaaggttgcttgctatgggcc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gtaaggatctcacacaggaaatccataagtatagaagaagaaggttgcttgctatgggcc 685
Query: 484 caccattcatgtgaaagaactgagttctatgttactcanaggatttatgtttagaaaatg 543
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 686 caccattcatgtgaaagaactgagttctatgttactcaaaggatttatgtttagaaaatg 745
Query: 544 tgaaaggttcctggaattattctgcaaaactctttca-taaatatatct 591
|||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 746 tgaaaggttcctggaattattctgcaaaactctt-caataaatgtatct 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 993
Length adjustment: 10
Effective length of query: 581
Effective length of database: 983
Effective search space: 571123
Effective search space used: 571123
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_g04.g1 MSMg01no460_g04.g1 CHROMAT_FILE:
MSMg01no460_g04.g1 PHD_FILE: MSMg01no460_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:37 2005
(589 letters)
>mm_chr9_10238484_10239472
Length = 989
Score = 969 bits (501), Expect = 0.0
Identities = 567/589 (96%)
Strand = Plus / Minus
Query: 1 tctcttcaaacacgaaagaaaaaattatgtatatatgtttacatcttgttagattctttt 60
||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||
Sbjct: 789 tctcttcaaacacgaaagagaagattatgtatatatgtttacatctttttagattctttt 730
Query: 61 gcgagcaatctgtagcctgtagcatctgcttgtgcttgtagaaatgctattaggcaatgg 120
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 729 gtgagcaatctgtagcctgtagtatctgcttgtgcttgtagaaatgctattaggcaatgg 670
Query: 121 aatttgatggtttgggctatcaaactttacagttggactggtctagaaaaattactgtgt 180
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 669 aatttgatggtttgggctatcaaactttatagttgaactggtctagacaaattactgtgt 610
Query: 181 cctttcaactaactgaccaactgaaaataccctctgaactttgcactcttgagaaagtta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cctttcaactaactgaccaactgaaaataccctctgaactttgcactcttgagaaagtta 550
Query: 241 gatgatatttgtctctctatagtacaaagatggtatggtattgtatgatgattctgctta 300
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 549 gatgatatttgtctctctatagtacaaagatggtgtggtatcgtatgatgattctgctta 490
Query: 301 gtaactttgtcttttcaacagaaaaatatgtatttaaatgagaattacagcatctatcaa 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 489 gtaactttgtcttttcaacagaaaaatatgtatttaaatgaaaattacagcatctataaa 430
Query: 361 ctctaaaatgatggacttttgtgcttgtcaataatcccaaaggagattttactcatatct 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 429 ctctaaaatgatggacttttgtgcttgtcaataattccaaaggagattttactcatatct 370
Query: 421 ctctttataagatgagttttacagtaatgttaaaacggtatggtatgcatacatatttgc 480
| ||||||||||||||||||| |||||||||||||| || |||| |||||||||||||||
Sbjct: 369 ccctttataagatgagttttatagtaatgttaaaactgtgtggtttgcatacatatttgc 310
Query: 481 acacattataatatcccaattatttgcagaataattgagcacatatattcactcccatac 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 acacattataatatcccaattatttgcagaataattgagcacatatattcactcccatat 250
Query: 541 atacatatattcacacagtttagcatctcaattatttgctgaaatattt 589
|||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 249 atacgtataatcacacagtttaacatctcaattatttgctgaaatattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
