BAC Information

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BAC

Clone NameMSMg01-460J18
Chromosome9 (Build37)
Map Location 40,483,522 - 40,607,221
singlet/doubletdoublet
Overlap gene9030425E11Rik, LOC100043076, LOC100043071
Upstream geneOlfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148
Downstream geneHspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495, LOC100042464, EG667566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460J18.T7 (MSMg01no460_j18.b1)MSMg01-460J18.TJ (MSMg01no460_j18.g1)
ACCAG545926AG545927
length745769
length of high quality
(start - end)		418 (63 - 480)337 (72 - 408)
definitionCHROMAT_FILE: MSMg01no460_j18.b1 PHD_FILE: MSMg01no460_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:54 2005CHROMAT_FILE: MSMg01no460_j18.g1 PHD_FILE: MSMg01no460_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,483,522 - 40,483,939)(40,606,885 - 40,607,221)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
ACTTCACCTGAGTTAACACAAGGAAAAGCAGAGGATTCCATCTGGGTTCT
GCCAAAGGTTTACAAAGCACTAGCTTCCTTACTTTCTTCAGGTAGATAAG
TGAGACACGGAGAAATCCATAATTTGTTGGAGCTGGCTCAGTCGGGGGTG
ATATCAGAAGGGCCCTTCCTGGTTGGCTGACATCCCCCATCATGGTCCAC
CCTCCTCTATGGGCTGTCTGGCAAACACTGTTGGTTTTGGCCACAGCCGT
TACTTATCTTTCCCCACCTCCTAGAAATAGTATTGCTGGGGAAGGCACAG
GGGCCTGGTTCTGAGTCACAAGTCTCTCTGCTTTGCGGGGGTTAGAAGAT
GTTCTTCCCCGCCTCCCATCTCCTGAGTTTGACCGCTGCACACATCAGTC
TTGTCAATGAGCAGCTGCAAGCAGCTGCTGACAGCTCATAGCATCTCAGC
CTCAAACCATAAGCTCCTCACAGGCTGGTCACCAAGGCCTACTCAGGCTC
TGCGTGGGCTGTATCTGCCTCGGACTTGTATGGTTTCCGCTAAATATAAT
TTTTGGAAGAAAATTTAAAATTCCCGCCCTCTTCCTCTTTGGATAAAAAC
TGGCTATTGGGTGGCCAATATATATTTATTTTTTGGAGTCCACTTCTTTG
GCCTTATTGAAATAATGTAATACTTTTTCTTTTGAGATGTTTTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAATTAACAACTCCTTAGTACCCTTCTAC
CTTCCCAGCCATGAGCCTGCAAGCTTCCAGGAATCTCACCAGAAACCCCA
TCTACAGGGAAAAGACTTGACTAACTCTAGTGAAGTCTTTTTGTTTGTTT
GGTTTTGTTTTTGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTG
TCCTGGAACTCACTTTGTAGACCAGGCTGGTCTGGAATTTAGGAATTGGC
CTGCCTCTGTCTCCCAAGTGCTGGAATTAAAGGCGTGGGTCACCATGCCC
GGCTTCTAGTGAGTCTTAGTGGCCCCAGGCTTCACTTTATCAGATGACCA
TTCCAGCCGAGGCATCTCATGAGCCAACCTATAATCTCACTTATCAAGAG
ACAGAAAAGGAGGATGGGACATTTGGAGCCCTGCTAGACAGGTGGTATGA
TATTATTGCAGTTTAAATTTCTCTTTGTATATAATGTCGGTTCAATCTAT
TTTTGAGCTTATACTCAATGGTAATTTGTGTCCTTCTTTTCTTGACTCTT
GTATTCCCCGCTTTTTATTGTTGCCTTTTTTTACTATAATAAGGTTGTTT
GCTCTGATATTTCCTGTACTACCGTTTTTGTTATTAACTTACCAACCACC
CCCCTTTTATTTTTATTGTTACCGTTTGTTTCTAGCCAATTTTGCCGCGT
CCGTCTCTTTTCTCATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_j18.b1 MSMg01no460_j18.b1 CHROMAT_FILE:
MSMg01no460_j18.b1 PHD_FILE: MSMg01no460_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:54 2005
         (418 letters)



>mm_chr9_40483322_40484139
          Length = 818

 Score =  793 bits (410), Expect = 0.0
 Identities = 416/418 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaacacaaggaaaagcagaggattccatctgggttctgccaaaggtttacaaagcacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaacacaaggaaaagcagaggattccatctgggttctgccaaaggtttacaaagcacta 260

                                                                       
Query: 61  gcttccttactttcttcaggtagataagtgagacacggagaaatccataatttgttggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttccttactttcttcaggtagataagtgagacacggagaaatccataatttgttggag 320

                                                                       
Query: 121 ctggctcagtcgggggtgatatcagaagggcccttcctggttggctgacatcccccatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggctcagtcgggggtgatatcagaagggcccttcctggttggctgacatcccccatca 380

                                                                       
Query: 181 tggtccaccctcctctatgggctgtctggcaaacactgttggttttggccacagccgtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtccaccctcctctatgggctgtctggcaaacactgttggttttggccacagccgtta 440

                                                                       
Query: 241 cttatctttccccacctcctagaaatagtattgctggggaaggcacaggggcctggttct 300
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttaccttcccccacctcctagaaatagtattgctggggaaggcacaggggcctggttct 500

                                                                       
Query: 301 gagtcacaagtctctctgctttgcgggggttagaagatgttcttccccgcctcccatctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtcacaagtctctctgctttgcgggggttagaagatgttcttccccgcctcccatctc 560

                                                                     
Query: 361 ctgagtttgaccgctgcacacatcagtcttgtcaatgagcagctgcaagcagctgctg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgagtttgaccgctgcacacatcagtcttgtcaatgagcagctgcaagcagctgctg 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no460_j18.g1 MSMg01no460_j18.g1 CHROMAT_FILE:
MSMg01no460_j18.g1 PHD_FILE: MSMg01no460_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:54 2005
         (337 letters)



>mm_chr9_40606885_40607621
          Length = 737

 Score =  644 bits (333), Expect = 0.0
 Identities = 336/337 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattaacaactccttagtacccttctaccttcccagccatgagcctgcaagcttccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aaattaacaactccttagtacccttctaccttcccagccatgagcctgcaagcttccagg 278

                                                                       
Query: 61  aatctcaccagaaaccccatctacagggaaaagacttgactaactctagtgaagtctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aatctcaccagaaaccccatctacagggaaaagacttgactaactctagtgaagtctttt 218

                                                                       
Query: 121 tgtttgtttggttttgtttttgttttttgagacagggtttctctgtgtagccctggctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tgtttgtttggttttgtttttgttttttgagacagggtttctctgtgtagccctggctgt 158

                                                                       
Query: 181 cctggaactcactttgtagaccaggctggtctggaatttaggaattggcctgcctctgtc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 157 cctggaactcactttgtagaccaggctggtctggaatttaggaattggcctgcctctgcc 98

                                                                       
Query: 241 tcccaagtgctggaattaaaggcgtgggtcaccatgcccggcttctagtgagtcttagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  tcccaagtgctggaattaaaggcgtgggtcaccatgcccggcttctagtgagtcttagtg 38

                                                
Query: 301 gccccaggcttcactttatcagatgaccattccagcc 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  gccccaggcttcactttatcagatgaccattccagcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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